BAC Information

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BAC

Clone NameMSMg01-446G06
Chromosome2 (Build37)
Map Location 144,771,982 - 144,772,438
singlet/doubletsinglet
Overlap genenone
Upstream geneRrbp1, 4930517K23Rik, LOC627160, EG433481, Snx5, 8430406I07Rik, Ovol2, Ppia-ps2_1789.1, LOC635097, Csrp2bp, LOC100043552, 6330439K17Rik, Polr3f, Rbbp9, Sec23b, Gm561, Dtd1, 1700010M22Rik
Downstream geneSlc24a3, LOC627312, OTTMUSG00000015643, LOC433482, LOC100043810, Rin2, Nat5, Crnkl1, 4930529M08Rik, LOC100043563
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-446G06.T7 (MSMg01no446_g06.b1)MSMg01-446G06.TJ (MSMg01no446_g06.g1)
ACCAG535098AG535099
length726765
length of high quality
(start - end)
461 (67 - 527)245 (71 - 315)
definitionCHROMAT_FILE: MSMg01no446_g06.b1 PHD_FILE: MSMg01no446_g06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:54 2005CHROMAT_FILE: MSMg01no446_g06.g1 PHD_FILE: MSMg01no446_g06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGGAATTCTGC
AGGATGACTCAAATGCCATAAAGCAATATATTCCACAATGTATATTTTAC
AACAGTGACTTTGGCAGTGGGAAGATTCTATCAGATATGTGCATGAGTCA
TATGGAACTGCATAGCACTCCAGAAATCACAGTGGCATAGATCAGTGAAG
ATCTATTTCTCATCCTTACACTTGCATTTTGACGAAGTGTGGCTGACTTG
AGTTGGAATTAGCTGAGGAATTGGTCCAAGGTTACGAATAACATTAAAGT
CTCGAGAGTTGATATTTTTTATGTTCCATGCAGTATGTTACTCTCTAGCT
GTGTGTGACTAGGATTTAAAATACAGTTTCCCTAGGTTGCATTAGCCACA
TTTTCAGGATTCACAAGCCATATGTGGCTATTGATTGGTTACCATGTTGA
ACAGAATGGAGTCATAAAAAGTTCTTTGGACAATGCTGACTTCCTGAGTA
AGCCCTGCGCAGTGTTTCCTTTTCCAGTGCTACAACCTGTATTAGTCATT
AATCTCTTCTGAAATAAGTGATGACAAACTTAGTAGCTTAAAAAAATACT
AATTTTCTCCTTCCTGATTCTTGGAGTCCCATTAATAAAACTAGTGTGGT
GACTGACACCCGCCCAGGTTTCCTCTCCGAAAGCTTCTGAATATTACTCC
ACTTCTCCCGCCTTTTTAACATTTGG
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAGTAGTTCTCAGAGCAGGGACCCCAGATAA
GCAGACTCCTTTGTGTAACATCTGAGAAACATGATCCGGATTGTTCCTCA
GAGTTGCTGAGTCATAGACTTGAGCGCAGTCCTGCGCTCTGGTTTAACAA
CCCTCCAGCTGATGTTGATTCAGCCAAGCTTCGAGAATCCCTTGCCTTTG
CCCATTCCAAGTGGAAGACTCAAGTGCTAGCCACCGAGGTGAAGGCATCA
CGGCCCAGGGTCAGCCTTTGTTCTCAGTCTAAGCTGCACATCAGACTCAC
CCGGGTGAGATCTGAGAATCCCGGAGTCCTGTATTGAAAGCCTGTGAAAT
TTCCCAGGCAACCTTAATGAGTATCTGAGGCAGAGAAGTTCAGGCCAGTC
AGATCTCCCAAGAAGCCCTTGGCCCTACAGTCAAGGTTCTCATCCTGTGT
GGACGCTGAACAGCTCTTTTCCAGTGTTCATATATCACATATTCCACCTG
CTATATTTTCACATTGCGTATTCTTACCATCTTTTTATCTATCCCCGTAC
TCTCTCTCTGTTCTCGTTCCTTCTTTACTCCTTCCCCCTTCTTCCTCCCC
TACTTTTCTCTCTTCTCATTTTTTCTTTTTTCCTATTCCTTCATCTTTTT
TCTCTACTCCTATTTTTCACTTCTTCTGTTTCTTATTCTCCTTTCTTCCC
TATACTTTCTTCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no446_g06.b1 MSMg01no446_g06.b1 CHROMAT_FILE:
MSMg01no446_g06.b1 PHD_FILE: MSMg01no446_g06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:54 2005
         (461 letters)



>mm_chr2_144771946_144772806
          Length = 861

 Score =  741 bits (383), Expect = 0.0
 Identities = 440/465 (94%), Gaps = 12/465 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   cataaagcaatatattccacaatgtatattttacaacagtgactttggcagtgggaagat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 cataaagcaatatattccacaatgtatattttacaacagtgactttggcagtgggaagat 434

                                                                       
Query: 61  tctatcagatatgtgcatgagtcatatggaactgcatagcactccagaaatcacagtggc 120
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 433 tctatcagatatgtgcatgagtcatttggaactgcatagcactccagaaatcacagtggc 374

                                                                       
Query: 121 atagatcagtgaagatctatttctcatccttacacttgcattttgacgaagtgtggctga 180
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 373 atagatcagtgaagatctatttctcatccttacacttgcattttgactaagtgtggctga 314

                                                                       
Query: 181 cttgagttggaattagctgaggaattggtccaaggttacgaataacattaaagtctcgag 240
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 313 cttgagttgggattagctgaggaattggtccaaggttacgaataacattaaagtcgcgag 254

                                                                       
Query: 241 agttgatatttttt----atgttccatgcagtatgttactctctagctgtgtgtgactag 296
           |||||| | |        ||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 253 agttgagact----ggaaatgttccatgcagtatgttactctctagctgtgtgtgaccag 198

                                                                       
Query: 297 gatttaaaatacagtttccctaggttgcattagccacattttcaggattcacaagccata 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 gatttaaaatacagtttccctaggttgcattagccacattttcaggattcacaagccata 138

                                                                       
Query: 357 tgtggctattgattggttaccatgttgaacagaatggagtcataaaaagttctttggaca 416
           |||||| ||||    |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 tgtggccattg----gttaccatgttgaacagaatggagtcataaaaagttctttggaca 82

                                                        
Query: 417 atgctgacttcctgagtaagccctgcgcagtgtttccttttccag 461
           |||||||||||||||||||||  ||| |||| | |||||||||||
Sbjct: 81  atgctgacttcctgagtaagctatgcacagtctctccttttccag 37


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 861
Length adjustment: 10
Effective length of query: 451
Effective length of database: 851
Effective search space:   383801
Effective search space used:   383801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)