BAC Information

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BAC

Clone NameMSMg01-446I08
Chromosome2 (Build37)
Map Location 59,596,691 - 59,596,816
singlet/doubletsinglet
Overlap geneTanc1
Upstream geneUpp2, BC062650, Pkp4, LOC625354, 2310032F03Rik, LOC100038999, LOC100039016
Downstream geneWdsub1, Baz2b, LOC667103, LOC667106, Ldha-ps, LOC100039092, March7, Cd302, LOC625861, Ly75, LOC100039176, Pla2r1, Itgb6, Rbms1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-446I08.T7 (MSMg01no446_i08.b1)MSMg01-446I08.TJ (MSMg01no446_i08.g1)
ACCAG535195AG535196
length743728
length of high quality
(start - end)
126 (119 - 244)364 (75 - 438)
definitionCHROMAT_FILE: MSMg01no446_i08.b1 PHD_FILE: MSMg01no446_i08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:04 2005CHROMAT_FILE: MSMg01no446_i08.g1 PHD_FILE: MSMg01no446_i08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTGCCGAAGGTGCGCGGAANNCAGA
GGAAATAGCCCAAAACGTCAAACACTGCAAAAACACCCAACTCAACTATT
TCTGCCACTTGTATACCATTTCAAGAATTCACATTAGCTAAACAAATCTC
TGTCAATTGCCCAAGGGGAAAAAAACCTCCCAAATACATTTGATTCAGTG
AAGCATTTTTGCAAGAGACTCTCAGGTTTCTTTCAGAAATGGAGAATTTT
ACTTACTATGCATAGTCTTTAGGGAAAGATGCAGACATCATGGAAAAGGT
ACTCTTACCAGTCTTTTTTTTTTCTGAGGGCCCGGACCCCTCCCCGAACG
GGATTATAACTGCACCTCCCGGCACCCTGGGGCTTTCCACATACTTGGGC
TTCCTGACGGGACCTGCGGAGGGAAAGATCTGAGTGTAGCTAATTTTTTC
CAGATGCAAACAGAGCTTCAGAACATACAATGTGTGTCCTTACCAGGACC
CAAACACGCCTAAAGGCTGGCCCTTCCCTCCCTTGAATACACAGGCTGCC
CGCTCAGACCATACACAATAATTGTCCAGTCTGGCCTGCCAATGTAGACC
ACGGCTGAGTCTCGTTTTGCAGAACGTATACTCCTGACCGAACCCGACTC
TACTCTTTTTTTGTTTTTATTCCCTGAGACCGTCTCACACAGTTGAGAAC
AACATCCTGTAAATTGACCGGCGCCCACTATCCAATCCATCGG
CTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXATACCGGAAAGCGAGGTTCAGNGAGAGACCCAGTTTCAAAAATCAAGG
TGGAAAGAGAAAGAGAGAGGACTATGCTCAAGATCAACCTCTGAGCCGGG
CGTGGTGACACACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCA
GATTTCTGATTAAAAACCCTGTGTTCTGGACACCTGGAGCCACACCTATA
TGGGCACATTCCCCATCTCCCCCAATATCTAGGTGCAGGTCAAACAGGCT
GGAATAAAGACTTTCTTTTGGCTATAAACTACACTTGAGTGGTCATCTCT
AGTGTGCCATCCCTAACGGAGTTTAAGACCAGCTTGGATTACACACTGTG
TTCATGTTCAATAAGGACCATATAGCAAGACATTGCTTCATCAAACAAAT
AATACATAGGAATGGATACTAGAATATCATCAGACTGTTCTACGTCATTT
CAAAGGAGCTTTGCATTGCATTTACCTAAAAAATATACATATACTATGCA
TTTATATAATATATACATATATATGCACATTACACTCCGCATATGCCTAT
AGAAAGATCCCCTATTATCCTGCTGCTTTCCCTTAACAAACACTAGCACT
AATGTGTTTTTCCTTGGTTCGCCACATTGGCCTCTCTGTAGTCCGTCTCG
TACTTTTTCTACTTCCTTACTCTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no446_i08.b1 MSMg01no446_i08.b1 CHROMAT_FILE:
MSMg01no446_i08.b1 PHD_FILE: MSMg01no446_i08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:04 2005
         (126 letters)



>mm_chr2_59596491_59597016
          Length = 526

 Score =  228 bits (118), Expect = 8e-65
 Identities = 124/126 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttcaagaattcacattagctaaacaaatctctgtcaattgcccaaggggaaaaaaacct 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 326 tttcaagaattcacattagctaaacaaacctctgtcaattgcccaaggggaaaaaaacct 267

                                                                       
Query: 61  cccaaatacatttgattcagtgaagcatttttgcaagagactctcaggtttctttcagaa 120
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 266 cccaaatacatttgattcagtgaagcattcttgcaagagactctcaggtttctttcagaa 207

                 
Query: 121 atggag 126
           ||||||
Sbjct: 206 atggag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 126
Length of database: 526
Length adjustment: 8
Effective length of query: 118
Effective length of database: 518
Effective search space:    61124
Effective search space used:    61124
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)