BAC Information

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BAC

Clone NameMSMg01-446K14
Chromosome2 (Build37)
Map Location 151,912,851 - 151,913,020
singlet/doubletsinglet
Overlap geneScrt2
Upstream geneLOC433486, LOC381390, 4930442J19Rik, LOC100043839, LOC100043840, 4921509C19Rik, Nsfl1c, Fkbp1a, Sdcbp2, Snph, LOC668929, BC052486, 5430405G05Rik, Psmf1, Rspo4, Angpt4, 5430432M24Rik, 2310046K01Rik
Downstream geneSrxn1, Tcf15, LOC100043843, Csnk2a1, Tbc1d20, Rbck1, Trib3, LOC628060, Nrsn2, Sox12, Zcchc3, 6820408C15Rik, EG629114, LOC668930, 9230107O10Rik, 9230002F21Rik, EG654457, OTTMUSG00000015852, Defb29, 4930525K10Rik, Defb19, OTTMUSG00000015859, Defb36, OTTMUSG00000015862, Rem1, H13, Mcts2, Id1, LOC629170, Cox4i2, Bcl2l1, Tpx2, Mylk2, Fkhl18, Dusp15, Ttll9, Pdrg1, Xkr7, BC020535
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-446K14.T7 (MSMg01no446_k14.b1)MSMg01-446K14.TJ (MSMg01no446_k14.g1)
ACCAG535303AG535304
length804739
length of high quality
(start - end)
170 (66 - 235)73 (225 - 297)
definitionCHROMAT_FILE: MSMg01no446_k14.b1 PHD_FILE: MSMg01no446_k14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:15 2005CHROMAT_FILE: MSMg01no446_k14.g1 PHD_FILE: MSMg01no446_k14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGGCGCTAAACGACTCACAAATGCCGACCTGCCNCGGNAATCTCTAGAT
TTTCCATGAGACAGTAGGCATCAGCCGCAGGCTCTACAGCCCGGTTGTGT
TAAGCCTGACCCCTCACTCTGCCCCCTGCACCTCTGTGGGCAGATGTTCA
GAGGTACCAGCTGCCAGGCCTTTGGAGAAGGTGGGTGTCATTCTGGTCCA
GTGCCCAGGGAACAGCTAACAAAGATGCTATAATAGGGGGTTTTTTTATG
GGACCCAGCCCCTTTGTCCAGCTCTTTGACTATACTTTTACACACTATCC
CTACCCCGCTTTTTGTGTTTTAAACAAGCCACGCCGGACAACCGGCCTGA
TCTTTTTTTTTTCCCCCCTGCTCCCTTGGTATTTTTTTAAATATTTTCTT
ACCTTCCTTCTCCCCCTTTCTTTTTGCTTTTCTTTTTCTCCCTCTCTTCC
CTCCCTTCCTATTATCTCTCCTTTTCCCTCCTTTTCCGCTTTTTTTCTTA
TACCCTTTTTTTTATTCTCTTCCATACCCCTTTTTTCTTCTTAAACCTCT
TCTTACTCTTCCCTTCCTTCTTTTCCTATTTTTATCCCTTTTTTTCTTTT
CCTTCCCTTTTCTTCTTCCACTTATATTCCACTTTTTCTTTCCTTCTTTT
TATTTTCTTTCCTTTCTTTTTTTTCTCCCCTTTTCCCTCCTTTTTTTTTT
TTTTTTCCGGCATTTCTTGACCTTTCTCCTCACTTTTCCCTTCTTTTTCT
ATTGTCATCCTTCGGTTTACTCGTCCTCTGCCTTTATTTTCATTTGTTCC
ATTG
GGAGGCCTGGNGGNGNCCGGTTTCGNAATCTGCNNGAANNANAGAAGGAT
AACGNCATCCGCCAGNNNAAGNGNCNNGNNCAAANCACGAACCAGGGCAA
ACATTTTCACCCACCGCANCNCNGGCACACCGGGGGCNNNCAGCNCGGCA
CAAAGCCAACAGGGGGACCCNCANAGCACGCNAGGGCACACAAGAANCGA
GNACAANAAAAAGNCACGGCAAGGGGCCAAAAAGAAGATTTTTTTTCTGC
AGNCCTTTTAGCTCTATGGTTGAGAAATGTTAAGAAAAGCATTAGCACCC
CCCACTTTGATGTTTACAANCGCNAAAGCCACCACCNGGANAAAGNNATT
TTTGCCCCCCCCCCGCTACAAAGTTAGGTAAGTTAATTAAATTCAACTCC
CCAAACCACTATGTTTTATCTATGATGCCAGGTGAGAAATGCTTATGAAC
CCAAAAAGGTAGGAGAACGGGGAACTAAGATTTTAGGCCTTAAAACATGT
TGGAAGATTCGTTTCCCCAGCCACCACAGGCAGCTACAGCAACGAAACAA
CCGGAAAACACACAGAGCTGACGCCCTGCTAGTGTGCCCAACAAACCACC
GCCCCCTCAGCGAACCACCTGAAAAACTCACCAGGCAGGAACATTTTTTT
TTTTTTTTTTAAAGAACCCAACCACAACCACCAACAAGGACCCCCCATAT
AACCACCAACCGCGTAACGCCAGAACCCCTACTTTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no446_k14.b1 MSMg01no446_k14.b1 CHROMAT_FILE:
MSMg01no446_k14.b1 PHD_FILE: MSMg01no446_k14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:15 2005
         (170 letters)



>mm_chr2_151912651_151913220
          Length = 570

 Score =  321 bits (166), Expect = 1e-92
 Identities = 169/170 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggcatcagccgcaggctctacagcccggttgtgttaagcctgacccctcactctgcccc 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 aggcatcagccgcaggctctacagcccggttgtgttaagccagacccctcactctgcccc 260

                                                                       
Query: 61  ctgcacctctgtgggcagatgttcagaggtaccagctgccaggcctttggagaaggtggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgcacctctgtgggcagatgttcagaggtaccagctgccaggcctttggagaaggtggg 320

                                                             
Query: 121 tgtcattctggtccagtgcccagggaacagctaacaaagatgctataata 170
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtcattctggtccagtgcccagggaacagctaacaaagatgctataata 370


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 170
Length of database: 570
Length adjustment: 8
Effective length of query: 162
Effective length of database: 562
Effective search space:    91044
Effective search space used:    91044
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)