BAC Information

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BAC

Clone NameMSMg01-447A02
Chromosome2 (Build37)
Map Location 145,663,345 - 145,663,665
singlet/doubletsinglet
Overlap geneRin2
Upstream geneSlc24a3, LOC627312, OTTMUSG00000015643, LOC433482, LOC100043810
Downstream geneNat5, Crnkl1, 4930529M08Rik, LOC100043563, Insm1, A230067G21Rik, LOC668918
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-447A02.T7 (MSMg01no447_a02.b1)MSMg01-447A02.TJ (MSMg01no447_a02.g1)
ACCAG535565AG535566
length768731
length of high quality
(start - end)
361 (66 - 426)571 (81 - 651)
definitionCHROMAT_FILE: MSMg01no447_a02.b1 PHD_FILE: MSMg01no447_a02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:41 2005CHROMAT_FILE: MSMg01no447_a02.g1 PHD_FILE: MSMg01no447_a02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNGGGGTGTTCGGNNNNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCGCGGAATTCCATTGAGGATCTGTCAATCAAATGT
TTTACGTTTATTTTGTCCACACGTATGTGTGTTGGGGGCGGGGCATGGGA
GTGCTTGTGCTGTGATGCATACATGTAGAGGACGCTGTTAGGAGTCTCAC
CTCCTGTCTTGCTGAGTGAGGGGCTCTCTTGTTTTTGGTGTGGTACTGAA
AACTCCAGGGTAGATAGTCGTTGGCCTTTTGAGAGCTTCCTGTCTTGGCC
TCCCATTTCACTCTAGGGATGCTGGGGTTACTCATGTGCACCTTTACCCG
GGTTCCAGAGAATGGAACTTAGGTTTTAAGGCTTCTGTGGACACTGCTTT
TACTAGCTGAGTCAGCTCTCTGGNCTGCAGTGTTTAATTTAAAGACAAAC
ACACAACAAAGCTTTCATCCTTAAAAGAAAATTGAGACCCCTAGGCCCCA
AGTTCCTAGTTGCTTCAGTTCATTATAAAGTTTTCTTTACCCCCAAAGAA
AAAGGCCCAGGGAAACCCTTTTTGGTTTTAATTTGGTTTTTTTAAAGCTT
AAATGGGGGTTTGGTTCTGGAAAAGGGGAAAAAACAAATTTTAAATTTTA
GTTTAAAAGAACTTTAATTGGGGATGGGAACCAACGTTAATCTTTCTATG
GAAACCGGGGTTGGAAAATTATTTTGTGGAACCCAAAAAAAACTGGGAAG
GTTTGGTTTTATATACCC
AAAACCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAAT
GGCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAA
TGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCT
AAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAG
AGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCT
GGAAATCAGTCTGGCGGTTCCTCATAATATTGGACATAGTACTACCGGAG
GATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGG
TAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAG
CCAGAAGCTGGAAAGAACCCAGATGCCCCTCAAAAGAGGAATGGATACAG
AAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAA
TGAATTTATGACATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCC
TGAGTGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTG
ATAAGTGGATATTATCCCCCAACCTAGGATTCCCAAGATATAAGGTACAA
CTTTGCTAATACATGAAACTCAAGAAAAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no447_a02.b1 MSMg01no447_a02.b1 CHROMAT_FILE:
MSMg01no447_a02.b1 PHD_FILE: MSMg01no447_a02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:41 2005
         (361 letters)



>mm_chr2_145663141_145663897
          Length = 757

 Score =  474 bits (245), Expect = e-138
 Identities = 296/325 (91%), Gaps = 21/325 (6%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccattgaggatctgtcaatcaaatgttttacgtttattttgtccacacgtatgtg 64
           ||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 205 gaattccatcgaggagctgtcaatcaaatgttttacgtttattttgtccacatgtatgtg 264

                                                                       
Query: 65  tgttgggggcggggcatgggagtgcttgtgctgtgatgcatacatgtagaggacgctgtt 124
           ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 265 tgttgggggcggggcatgggagtgcttgtgccgtgatgcacacatgtagaggacgctgtt 324

                                                                       
Query: 125 aggagtctcacctcctgtcttgctgagtgaggggctctcttgtttttggtgtggtactga 184
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 325 aggagtctcacctcctgtcttgctgagtgaggggctctcttgtttttgctgtggtactga 384

                                                                       
Query: 185 aaactccagggtagatagtcgttggccttttgagag-----------------cttcctg 227
           |||||||||||||||||||||   ||||||||||||                 |||||||
Sbjct: 385 aaactccagggtagatagtcg---gccttttgagagattctgtgttgggagagcttcctg 441

                                                                       
Query: 228 tcttggcctcccatttcactctagggatgctggggttactcatgtgcacctttacccggg 287
           ||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||
Sbjct: 442 tcttggcctcccatttcactctagggatgctggggttactcatgtgcacgtt-acccagg 500

                                    
Query: 288 ttccagagaatggaacttaggtttt 312
           |||||||||||||||||||||||||
Sbjct: 501 ttccagagaatggaacttaggtttt 525


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 361
Length of database: 757
Length adjustment: 9
Effective length of query: 352
Effective length of database: 748
Effective search space:   263296
Effective search space used:   263296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)