BAC Information

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BAC

Clone NameMSMg01-447G22
Chromosome2 (Build37)
Map Location 129,636,784 - 129,637,210
singlet/doubletsinglet
Overlap geneStk35
Upstream geneTmem87b, 1600015H20Rik, Zc3h8, LOC100043735, LOC100043736, Zc3h6, LOC668894, Ttl, LOC100043738, Rpo1-2, Chchd5, LOC545461, LOC100043431, Slc20a1, A730036I17Rik, LOC671466, Ckap2l, Il1a, Il1b, OTTMUSG00000015529, LOC668896, F830045P16Rik, Sirpa, Pdyn, Ppia-ps2_1620.1
Downstream geneTgm3, AU015228, LOC100043438, Tgm6, Snrpb, Tmc2, Nol5a, Idh3b, Ebf4, LOC668899, Cpxm1, LOC100043446, 1700020A23Rik, 4933425O20Rik, A930025D01Rik, Vps16, Ptpra, Mrps26, Oxt, Avp, 1700012O15Rik, Ubox5, Fastkd5, Prosapip1, 2600009E05Rik, Itpa, Slc4a11, 4930402H24Rik, LOC100043766
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-447G22.T7 (MSMg01no447_g22.b1)MSMg01-447G22.TJ (MSMg01no447_g22.g1)
ACCAG535888AG535889
length733767
length of high quality
(start - end)		538 (52 - 589)427 (84 - 510)
definitionCHROMAT_FILE: MSMg01no447_g22.b1 PHD_FILE: MSMg01no447_g22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:16:20 2005CHROMAT_FILE: MSMg01no447_g22.g1 PHD_FILE: MSMg01no447_g22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:16:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGA
TCCGCGGAATTCAGGAGATTCTCGGGGAGGGGAAACTGTAATCAGAATAT
AATGTATGAAAGTTTTTTCTTTTTTTTGTCTTTGTTTTTCTTTTCTTTCT
TTTTTATTAGATATTTTCTTTACATACATTTCAAATGCTATCCTGAAAAT
TCCCTATACTCTCCCCCCGCTCTGCTCCCCTACCCACCCACTCCACTTCT
TGGCCCTGGCATTCCCCTGTACTGGGGCATATAAAGTCTGCAAGACCAAA
GGGCCTCTCTTCCCAGTGATGGCCTACTATGTCATCTTCTGCTACATATG
CAGCTAGAGATATGAGCTCTGGGGGTACTGGTTAGTTCATATTGTTGTTC
CACCTATAGGGTTGCCCACCCCTTCAGCTCCTTGGGTGCTTTCTCTAACT
TCTCCATTGGGGGCCCTGTGTTCCATCTTATAGATGACTGTGAGCATCCA
CTTCTGTATTTGCCAGGCTCTGGCATAGCCTCATACGAGACAGCTATACC
AGGGTCCCTTCAGCAAAATCTTGCTGTCATATGCAATAGTGTCTGGNTTT
GGTGACTGATTGTGGGATGGATCCCTGGGTGGGGTAGTCTCTGGAAAGTC
CATCCTTTCATCTTAGCTCCAAACTTTGTCTCTGGAACTCCTTTTATGGG
TATTTTTTCCCTATCTAACGAGGAATGATGATA

TAATTAATCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTGATAATAAGAAACA
GTTTCTGAAGAACTTGAAAGATTCAGCCTCATATAGTTTCCTCTTAAAAC
ACTTCTCTACATTTCTTACTTTGTACTCAGATAATCTGACCTATCTCTAC
TTGCCAAGACTTCAGAGCCAATCTGTGTCAACAAGACTTACTTCCTGGCC
CTGAATTTTCTCTACAACTCCAGAGTCCAGCCCAGGGAGTGTGTAAGTAC
AATAACAAAAGAGCACTCACCTAGTTTAAAAACACCCAAGACGTTCAGCC
CTGGAGTTTAAGCAGCACATGTGACCTGGTCCATTCGGGTTTCAAGTTCA
AAAGCATCAGGTCGGTCCTGTGGGTTAGCAGCTAACATGTCTTTCAAGAG
CTGCTTGACCCCCTCAGACATGGAAGTCCTACGTTTCTGGGGGATATGCA
ACTCCATCTTTGGGTTTTCTAGCAGCGCCTCACCAACAGGGACGATCTCA
GTCCCTTGCTTAATGTAGGCCCCCACGAGCTTCTTCTTTGGTTCAGAGGC
ATAAAGGGAATTCTTTTTATCATTGTCCCCAATGAAAAGGCCCAAACAAA
AAAGGCCCGCCCTGGCTGTGAAAGGGTCCTCCCCCAATTCCCTAACCCTG
GTGGAAACTTGATCCCCATCTTTAGATCCCCCCCTTTTTTTCCCTTTCCT
TTTTTGGTTTCCTGGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no447_g22.g1 MSMg01no447_g22.g1 CHROMAT_FILE:
MSMg01no447_g22.g1 PHD_FILE: MSMg01no447_g22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:16:20 2005
         (427 letters)



>mm_chr2_129636584_129637410
          Length = 827

 Score =  818 bits (423), Expect = 0.0
 Identities = 426/427 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attgataataagaaacagtttctgaagaacttgaaagattcagcctcatatagtttcctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 attgataataagaaacagtttctgaagaacttgaaagattcagcctcatatagtttcctc 568

                                                                       
Query: 61  ttaaaacacttctctacatttcttactttgtactcagataatctgacctatctctacttg 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 567 ttaaaacacttctctacatttcttactttgtaatcagataatctgacctatctctacttg 508

                                                                       
Query: 121 ccaagacttcagagccaatctgtgtcaacaagacttacttcctggccctgaattttctct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ccaagacttcagagccaatctgtgtcaacaagacttacttcctggccctgaattttctct 448

                                                                       
Query: 181 acaactccagagtccagcccagggagtgtgtaagtacaataacaaaagagcactcaccta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 acaactccagagtccagcccagggagtgtgtaagtacaataacaaaagagcactcaccta 388

                                                                       
Query: 241 gtttaaaaacacccaagacgttcagccctggagtttaagcagcacatgtgacctggtcca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gtttaaaaacacccaagacgttcagccctggagtttaagcagcacatgtgacctggtcca 328

                                                                       
Query: 301 ttcgggtttcaagttcaaaagcatcaggtcggtcctgtgggttagcagctaacatgtctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ttcgggtttcaagttcaaaagcatcaggtcggtcctgtgggttagcagctaacatgtctt 268

                                                                       
Query: 361 tcaagagctgcttgaccccctcagacatggaagtcctacgtttctgggggatatgcaact 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tcaagagctgcttgaccccctcagacatggaagtcctacgtttctgggggatatgcaact 208

                  
Query: 421 ccatctt 427
           |||||||
Sbjct: 207 ccatctt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 827
Length adjustment: 9
Effective length of query: 418
Effective length of database: 818
Effective search space:   341924
Effective search space used:   341924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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