BAC Information

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BAC

Clone NameMSMg01-447H11
Chromosome2 (Build37)
Map Location 55,876,112 - 55,876,362
singlet/doubletsinglet
Overlap genenone
Upstream geneGalnt13, LOC666936, Kcnj3
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-447H11.T7 (MSMg01no447_h11.b1)MSMg01-447H11.TJ (MSMg01no447_h11.g1)
ACCAG535914AG535915
length735774
length of high quality
(start - end)		564 (51 - 614)369 (78 - 446)
definitionCHROMAT_FILE: MSMg01no447_h11.b1 PHD_FILE: MSMg01no447_h11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:16:22 2005CHROMAT_FILE: MSMg01no447_h11.g1 PHD_FILE: MSMg01no447_h11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:16:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAGTTGTTATTTTGAAGGGGATTGCATTGAATCTTTAGATT
GCTTCTGGTAAGACAGAATTTTTTTTACTATTTTAATTTCAGTGATCCAC
AAATATGAGAGGTCTTTCCATCTTCTGAGGTCTTCTTCAATATCTTTCTT
CAGAGACTTGACATTCTTGACATACAGAACTTTCACTTGCTTGGCTAGAG
TCATGCCAAGATATTTTATATTATTTGTAACTATTGTGAGGCATGTTGGT
TCCCTAATTTCTTTTTCAGCCAATTTATCCTTTGTATAGAGGAAGGCTAT
TGATTAGTGTGAATTAATTTTATATTCAGCCACATTGCTGAAGTAGTTTT
TAAGGTGTAGGAGTTCTCTAGTAGAAATTTTAAGGTCTCACACACACACA
CACACACACACACACACACACACACACACACACACACACACACACATATA
TATATATATATATATATATATATATATATGTATATATATATACACATACT
AACATATCATCTGCAAATAGTGATACCTTGACTTCTTCCTTTCTGATTTT
TATCCCTTTGGCCTCCTGTTGTTGTATAATTGCTCTAGCTAANACTTTGA
GTACTATATTGGATGAATAGGGAGAGAATCAGCAGCCTTGTCTTGTTCCT
GATTTTAGTGAGATTGAATACTTCACATTTCTTCN

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAAAGAGGCACACTTGAATTGTAC
TACTAGAAATAGCAGACAAAAATCTGATCTTTTAATATTTCAAATAGATA
AGGGTATTCAGGTATTTTTCTCCAAATTTAACTTTAAGGTAAAAATGGAA
TTTTATGATGGAGTAGTACCTCATTTTCCAGACTACTTAACTTCATCGGG
AAGTCCTAGATGTCAAGGCAGCCTGGGAATAGACTATCTCAAGCAAACTC
AATTTACATTAATACTACATTTAAATGCTCTCTCTCTCTCTCTCTCTCTA
TATATATATATATATATATATATATATATATATATATATATATATATATA
TATATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GTGAGAGAGAGAGAGAGAGAGAGAGTGAGGGGGGGGGGGGGGTGTGNGTG
TGTGAGTGAGTTAGAGAGTGAGTGAGGGTTGTTAAAAAAAAAATATATAA
ATATTTATATTTTTTTTTGTTTTNTTGATAGAGAGAGAGAGAATAAATTT
ATATATTTATTTATAATAAATATAAATAAAAATGATTGTTTGGGGGTTTT
ATGTTAAAAAGATTNGNGTGTGGGTGTTGGGTGTTGNTGGTATTTTATTA
TTAAAAAAAAATATGAGGGGGGGGGGGGGTGGGGTGGGTTNTATATTATG
TTATGTTAGTGGGGAATAAGAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no447_h11.g1 MSMg01no447_h11.g1 CHROMAT_FILE:
MSMg01no447_h11.g1 PHD_FILE: MSMg01no447_h11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:16:22 2005
         (369 letters)



>mm_chr2_55875912_55876680
          Length = 769

 Score =  478 bits (247), Expect = e-139
 Identities = 250/251 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaagaggcacacttgaattgtactactagaaatagcagacaaaaatctgatcttttaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaagaggcacacttgaattgtactactagaaatagcagacaaaaatctgatcttttaata 260

                                                                       
Query: 61  tttcaaatagataagggtattcaggtatttttctccaaatttaactttaaggtaaaaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttcaaatagataagggtattcaggtatttttctccaaatttaactttaaggtaaaaatg 320

                                                                       
Query: 121 gaattttatgatggagtagtacctcattttccagactacttaacttcatcgggaagtcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaattttatgatggagtagtacctcattttccagactacttaacttcatcgggaagtcct 380

                                                                       
Query: 181 agatgtcaaggcagcctgggaatagactatctcaagcaaactcaatttacattaatacta 240
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 agatgtcaaggcagcctgggaatagactatctctagcaaactcaatttacattaatacta 440

                      
Query: 241 catttaaatgc 251
           |||||||||||
Sbjct: 441 catttaaatgc 451


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 769
Length adjustment: 9
Effective length of query: 360
Effective length of database: 760
Effective search space:   273600
Effective search space used:   273600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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