BAC Information

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BAC

Clone NameMSMg01-447H20
Chromosome2 (Build37)
Map Location 57,638,135 - 57,757,892
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC227920, Nr4a2, LOC100041900, LOC100042910, Gpd2, LOC271788
Downstream geneGalnt5, A330104H05Rik, LOC667026, Pscdbp, LOC100042926, Acvr1c, LOC667062, Acvr1, LOC674940, Upp2, BC062650
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-447H20.T7 (MSMg01no447_h20.b1)MSMg01-447H20.TJ (MSMg01no447_h20.g1)
ACCAG535931AG535932
length735766
length of high quality
(start - end)		591 (51 - 641)458 (80 - 537)
definitionCHROMAT_FILE: MSMg01no447_h20.b1 PHD_FILE: MSMg01no447_h20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:16:24 2005CHROMAT_FILE: MSMg01no447_h20.g1 PHD_FILE: MSMg01no447_h20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:16:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,757,306 - 57,757,892)(57,638,135 - 57,638,592)
sequence
NNNAAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCAAGATGGAGTTGGCCCTGCCTCAGATCCAAATCAGGGT
TTTGGGATGGGATGAGGAATGAGCACTTTCCACATGATTTGCAGGTGGGT
CTTATGCAACACTATGGCCTGAGAAATGGAGATCTGAGTTTCCTGCTCTC
ATAAGAACTATTTATTCTCATGAGAGAGTCTTGAGACACTTACCACATTT
GCCACAGTAGATGAAAGTCATGTCGCTTCATGACTGTTCAAAGTTGGGCA
AAAATTGGTTTCATCACCATCTTTATGAGATCCAGTAAGTAAAAGAGAAG
TTGTACCACAACCTTGGGCTGGACGATAAAAGAAAACTGGGTGTTACTTT
GATCTCGTATTTCCAACTCTGCAAAAACAATAGAACATGTGCCCGTCCTC
TTCCCAAGAGGAGGGCCTCCACAACCACACTGTGGAGATTAGGAAAAAAT
GTTTTCTTCACATGAATAATTTCTGAAAAGAGGTTCTTACTTGGCATACC
AATTACAAAAGGTGCCTGAATTTTAGGTGGACTCTGTTTGAGAGGAGTTG
GGGACAGGTATTTGAGTGTTTTGACATCCTCTTGGCTGGTGGCTAAGGGG
GGGGAAGTGGGGNANNNNNNNGNNNNNNNNNNNNNTTGGGTNGNGGNNTG
GTTGNTNNNGGGGTGTTGNTTGTTTTTTTGTGGTT

NNNNCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTGATGTTAGTTATTGGTAA
TACATTATTGTTCTATTGTTGCCATATTTTCTTCATAGTTATTTATTTGG
TTGAATATTTTTTGTAACATAAGCTAAGAATGGAGCAAAAACTTCAAGTA
ATAGAATTGAAAATCTTCAATGGGATAGATCTACCTGTAGGGAATCTCTG
TTTTTTGCTCTCATGAGAAAACTCTTCAAATCACCACATAGCTAAATAAT
TAAGAACGTTTTCTCTTGTATAACCACACCCAGTTTCAGTTTATCCTTAG
ATGGAGACCCTCAAATCACATTCTTAGTTTAGATATATAATCTTAATGTC
AATTTGCTACTTCAAAATGGCCAGTGTGATTACAAAGAATTGTTTTGTAA
TTACAAAATTACTATCGTAATTTCTTTGACACTTCATATTTTATCATATA
CTGATCTTTATTCTTTTTTTCAGGTGCGTTAAAGTATTCATATGTTAAAA
CTATCAAGACCCATTATGAAACTCCTGCTTATTATTAAGTCTTAGCTAAA
TTAACTAAGTACTTTGATTCTTCTGGGTGCTAAGCAATAATTTTGTTTAC
ATACCAATTAATTAAGTTACTCACTGGAATTTTGGGTTAATAAGCTGGAA
AGATCCAAAAGGCCGCCCAAAAAAAAAAAGGCTCCTCCTTTCTCTTCTTG
AAGGCCAATCCCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no447_h20.b1 MSMg01no447_h20.b1 CHROMAT_FILE:
MSMg01no447_h20.b1 PHD_FILE: MSMg01no447_h20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:16:24 2005
         (591 letters)



>mm_chr2_57757102_57758092
          Length = 991

 Score = 1120 bits (579), Expect = 0.0
 Identities = 585/587 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcaagatggagttggccctgcctcagatccaaatcagggttttgggatgggatg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 gaattctcaagatggagttggccctgcctcagatccaaatcagggttttgggatgggatg 732

                                                                       
Query: 65  aggaatgagcactttccacatgatttgcaggtgggtcttatgcaacactatggcctgaga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 aggaatgagcactttccacatgatttgcaggtgggtcttatgcaacactatggcctgaga 672

                                                                       
Query: 125 aatggagatctgagtttcctgctctcataagaactatttattctcatgagagagtcttga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 aatggagatctgagtttcctgctctcataagaactatttattctcatgagagagtcttga 612

                                                                       
Query: 185 gacacttaccacatttgccacagtagatgaaagtcatgtcgcttcatgactgttcaaagt 244
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 gacactcaccacatttgccacagtagatgaaagtcatgtcgcttcatgactgttcaaagt 552

                                                                       
Query: 245 tgggcaaaaattggtttcatcaccatctttatgagatccagtaagtaaaagagaagttgt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 tgggcaaaaattggtttcatcaccatctttatgagatccagtaagtaaaagagaagttgt 492

                                                                       
Query: 305 accacaaccttgggctggacgataaaagaaaactgggtgttactttgatctcgtatttcc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 accacaaccttgggctggacgataaaagaaaactgggtgttactttgatctcgtatttcc 432

                                                                       
Query: 365 aactctgcaaaaacaatagaacatgtgcccgtcctcttcccaagaggagggcctccacaa 424
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 431 aactctgcaaaaacaatagaacatgtgcccctcctcttcccaagaggagggcctccacaa 372

                                                                       
Query: 425 ccacactgtggagattaggaaaaaatgttttcttcacatgaataatttctgaaaagaggt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 ccacactgtggagattaggaaaaaatgttttcttcacatgaataatttctgaaaagaggt 312

                                                                       
Query: 485 tcttacttggcataccaattacaaaaggtgcctgaattttaggtggactctgtttgagag 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 tcttacttggcataccaattacaaaaggtgcctgaattttaggtggactctgtttgagag 252

                                                          
Query: 545 gagttggggacaggtatttgagtgttttgacatcctcttggctggtg 591
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 gagttggggacaggtatttgagtgttttgacatcctcttggctggtg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 991
Length adjustment: 10
Effective length of query: 581
Effective length of database: 981
Effective search space:   569961
Effective search space used:   569961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no447_h20.g1 MSMg01no447_h20.g1 CHROMAT_FILE:
MSMg01no447_h20.g1 PHD_FILE: MSMg01no447_h20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:16:24 2005
         (458 letters)



>mm_chr2_57637935_57638792
          Length = 858

 Score =  847 bits (438), Expect = 0.0
 Identities = 453/458 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   attgatgttagttattggtaatacattattgttctattgttgccatattttcttcatagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attgatgttagttattggtaatacattattgttctattgttgccatattttcttcatagt 260

                                                                       
Query: 61  tatttatttggttgaatattttttgtaacataagctaagaatggagcaaaaacttcaagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatttatttggttgaatattttttgtaacataagctaagaatggagcaaaaacttcaagt 320

                                                                       
Query: 121 aatagaattgaaaatcttcaatgggatagatctacctgtagggaatctctgttttttgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatagaattgaaaatcttcaatgggatagatctacctgtagggaatctctgttttttgct 380

                                                                       
Query: 181 ctcatgagaaaactcttcaaatcaccacatagctaaataattaagaacgttttctcttgt 240
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 381 ctcatgagaaaactcttcaaatcaccacatagctaaataattaagaaccttttctcttgt 440

                                                                       
Query: 241 ataaccacacccagtttcagtttatccttagatggagaccctcaaatcacattcttagtt 300
           |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 441 ataaccacacccagtttcagtttatcctgagatgaagaccctcaaatcacattcttagtt 500

                                                                       
Query: 301 tagatatataatcttaatgtcaatttgctacttcaaaatggccagtgtgattacaaagaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tagatatataatcttaatgtcaatttgctacttcaaaatggccagtgtgattacaaagaa 560

                                                                       
Query: 361 ttgttttgtaattacaaaattactatcgtaatttctttgacacttcatattttatcatat 420
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 561 ttgttttgtaattacaaaattactatcgtaattgctttgacacttcatattttatcatat 620

                                                 
Query: 421 actgatctttattctttttttcaggtgcgttaaagtat 458
           ||||||||||||||||||||||||||| ||||||||||
Sbjct: 621 actgatctttattctttttttcaggtgtgttaaagtat 658


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 858
Length adjustment: 10
Effective length of query: 448
Effective length of database: 848
Effective search space:   379904
Effective search space used:   379904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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