BAC Information

Click to search

BAC

Clone NameMSMg01-448A22
Chromosome2 (Build37)
Map Location 145,742,566 - 145,921,170
singlet/doubletdoublet
Overlap geneCrnkl1, 4930529M08Rik, LOC100043563
Upstream geneSlc24a3, LOC627312, OTTMUSG00000015643, LOC433482, LOC100043810, Rin2, Nat5
Downstream geneInsm1, A230067G21Rik, LOC668918, Gm114, Xrn2, Nkx2-4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-448A22.T7 (MSMg01no448_a22.b1)MSMg01-448A22.TJ (MSMg01no448_a22.g1)
ACCAG536361AG536362
length764762
length of high quality
(start - end)		488 (47 - 534)406 (78 - 483)
definitionCHROMAT_FILE: MSMg01no448_a22.b1 PHD_FILE: MSMg01no448_a22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:11 2005CHROMAT_FILE: MSMg01no448_a22.g1 PHD_FILE: MSMg01no448_a22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,742,566 - 145,743,049)(145,920,765 - 145,921,170)
sequence
NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTGTTCTCTCATAAAGGAATAACGTTCCCTTCAACCTATCACA
CCGCCTGTGCTTGTTAGGAGTGGACTCTGAAGAGCAAAGTCACTAATTTT
TGTCTTCATGTGCACAAGCAACATACTCTAGGAAGATGGCTTAGTTATGG
AACTAGCTAGCATTCTGAACTGCTTTCACCTCCATCTAGGATCTGCACTA
ACTCAAAGGACGTTCAGTGGCAGATTCTTCCTGACCAGCACCCTTGGTAT
TCAATGAAACTCAGGCTAACGTCTGAGCCTAGTGCTGGTCTGGTGGCTGA
AAAGATCTGTTGCTTACCTACTAGTAGTACTGTTTTCTTGTAACTTTTAC
AAAATTATTTTATTTTCAAGACCCAATTTAGTAATATTATTGAGCAGCTT
TATTCCCTTAGATGGATATACTTAAATTTAATACTCAGTTGTTTACTAAT
GGTTCTTTTAGGTAGAAACCAGTCTTGAAAGAACAGTTCTAGGCGTTGAG
TGGTTAATAAAAATGGCTATGATTTACCGGATGAGTAAAACCATGCCTCC
CAGATATAGGCAGTGCTTATTTTTTTGTGAGCCGAGCACCCCCAAAGGAA
GTTACTGGCCCGTGGCCAGGGCCTTCCCTGAGAAAACAAACACTGGGGGG
CGTTTTGGAATCCTGGCGGGTTAAGGAAACCTGGTAAAATCCTTGTTGTG
TCAAATCCCCCCCT

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTACAGGTTATGCCATGTTTGAGT
GTCAGCCCACTTCCAAGAAACTGGACTCCTAACCCCCACAGTGCAGCATT
TCCCTTGGAGTCCTCAAGGCAATACAGTGACGTCAGTAGTGTTATTAGCT
CTATTTTTCTCAGGTAAAACTGAGGCACAATGGTTTTCAGAGACCATCCA
TATTAAGTGTCACCTCACTTAACCTCTGCCTGTACAGTCGCCCCCTAGAA
CTGGAGGTGTGTGCGATGGGACGCCCTGTTGAACACCAAAATCTGAAGGT
GCCCAAGTCTCTGATTCAAGATGCCATGACAGGCACACATAAGGTATATA
CCACCACTTGAATACTTAATATCATCGCAGAATTGCTTATAACAACTTAC
ACAGAATAAAAAGTAAGTAGCTGGTCTACTGTGTTGTATTGGAATAAAGT
CTGCTTGTGCTCACAGCAGTCAGGTTTTTCTCCCCAGGATTCTCTGCTGA
TGGCCCTTGCACCTATGGATTAAAACCCCCCGGGAAGACTTGGATGAGGT
CCTGTCCTGTGGGCCTTCATTTCTTAAAAGTTTTTAAAACTTTTTTAATT
CCCCCGGTTGTACACTACTTTCCTTCTTTCACCTGTCTTCGATCTTGTTT
GGTATTCATATGGTGCCCCTCCAAAAAATTTAAGGTCCTTTTTTTAAGAA
CGCTTACTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no448_a22.b1 MSMg01no448_a22.b1 CHROMAT_FILE:
MSMg01no448_a22.b1 PHD_FILE: MSMg01no448_a22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:11 2005
         (488 letters)



>mm_chr2_145742362_145743249
          Length = 888

 Score =  936 bits (484), Expect = 0.0
 Identities = 484/484 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttgttctctcataaaggaataacgttcccttcaacctatcacaccgcctgtgc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttgttctctcataaaggaataacgttcccttcaacctatcacaccgcctgtgc 264

                                                                       
Query: 65  ttgttaggagtggactctgaagagcaaagtcactaatttttgtcttcatgtgcacaagca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttgttaggagtggactctgaagagcaaagtcactaatttttgtcttcatgtgcacaagca 324

                                                                       
Query: 125 acatactctaggaagatggcttagttatggaactagctagcattctgaactgctttcacc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acatactctaggaagatggcttagttatggaactagctagcattctgaactgctttcacc 384

                                                                       
Query: 185 tccatctaggatctgcactaactcaaaggacgttcagtggcagattcttcctgaccagca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tccatctaggatctgcactaactcaaaggacgttcagtggcagattcttcctgaccagca 444

                                                                       
Query: 245 cccttggtattcaatgaaactcaggctaacgtctgagcctagtgctggtctggtggctga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cccttggtattcaatgaaactcaggctaacgtctgagcctagtgctggtctggtggctga 504

                                                                       
Query: 305 aaagatctgttgcttacctactagtagtactgttttcttgtaacttttacaaaattattt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaagatctgttgcttacctactagtagtactgttttcttgtaacttttacaaaattattt 564

                                                                       
Query: 365 tattttcaagacccaatttagtaatattattgagcagctttattcccttagatggatata 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tattttcaagacccaatttagtaatattattgagcagctttattcccttagatggatata 624

                                                                       
Query: 425 cttaaatttaatactcagttgtttactaatggttcttttaggtagaaaccagtcttgaaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cttaaatttaatactcagttgtttactaatggttcttttaggtagaaaccagtcttgaaa 684

               
Query: 485 gaac 488
           ||||
Sbjct: 685 gaac 688


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space:   419684
Effective search space used:   419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no448_a22.g1 MSMg01no448_a22.g1 CHROMAT_FILE:
MSMg01no448_a22.g1 PHD_FILE: MSMg01no448_a22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:11 2005
         (406 letters)



>mm_chr2_145920413_145921218
          Length = 806

 Score =  785 bits (406), Expect = 0.0
 Identities = 406/406 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tacaggttatgccatgtttgagtgtcagcccacttccaagaaactggactcctaaccccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 tacaggttatgccatgtttgagtgtcagcccacttccaagaaactggactcctaaccccc 699

                                                                       
Query: 61  acagtgcagcatttcccttggagtcctcaaggcaatacagtgacgtcagtagtgttatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 acagtgcagcatttcccttggagtcctcaaggcaatacagtgacgtcagtagtgttatta 639

                                                                       
Query: 121 gctctatttttctcaggtaaaactgaggcacaatggttttcagagaccatccatattaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 gctctatttttctcaggtaaaactgaggcacaatggttttcagagaccatccatattaag 579

                                                                       
Query: 181 tgtcacctcacttaacctctgcctgtacagtcgccccctagaactggaggtgtgtgcgat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 tgtcacctcacttaacctctgcctgtacagtcgccccctagaactggaggtgtgtgcgat 519

                                                                       
Query: 241 gggacgccctgttgaacaccaaaatctgaaggtgcccaagtctctgattcaagatgccat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 gggacgccctgttgaacaccaaaatctgaaggtgcccaagtctctgattcaagatgccat 459

                                                                       
Query: 301 gacaggcacacataaggtatataccaccacttgaatacttaatatcatcgcagaattgct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 gacaggcacacataaggtatataccaccacttgaatacttaatatcatcgcagaattgct 399

                                                         
Query: 361 tataacaacttacacagaataaaaagtaagtagctggtctactgtg 406
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 tataacaacttacacagaataaaaagtaagtagctggtctactgtg 353


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 806
Length adjustment: 9
Effective length of query: 397
Effective length of database: 797
Effective search space:   316409
Effective search space used:   316409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |