BAC Information

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BAC

Clone NameMSMg01-448B01
Chromosome2 (Build37)
Map Location 171,858,938 - 171,859,364
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043743, LOC100043744
Downstream geneCbln4, Mc3r, 2010011I20Rik, Aurka, Cstf1, F730031O20Rik, 2410001C21Rik, A330041C17Rik, 1700029J11Rik, LOC629957, Tcfap2c, LOC100043750, Bmp7, LOC100043751, Spo11, Rae1, Rbm38
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-448B01.T7 (MSMg01no448_b01.b1)MSMg01-448B01.TJ (MSMg01no448_b01.g1)
ACCAG536367AG536368
length723747
length of high quality
(start - end)
436 (77 - 512)388 (82 - 469)
definitionCHROMAT_FILE: MSMg01no448_b01.b1 PHD_FILE: MSMg01no448_b01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:11 2005CHROMAT_FILE: MSMg01no448_b01.g1 PHD_FILE: MSMg01no448_b01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGGATCCGCG
GAATTCACCCTCGTTATCACGCTATGGGCTGCAAAATCCTAAGGTTGTAG
TGTGGCTGACATCTCCCTTTCCCTGTTTTGCTTTTGGCCCTAAAGACCAA
CAAAGCTGGATTTATTGCTCGAAGCAGCCTGTGGGTGTGGTCTCACCTTG
TATTCCCATTGAGGGCCATGGGCTTTTATTCACCCTCTTGGACTCTATAA
ACCACTGGGCATCAGTGTCTTCTGGGCTTAGCAAGCTCCTATATTGGTTG
ACCTGGTGGCTATAAGTGTTTAAAACAGAGATATATGGCCATTGCTCACT
ATTCTTACACAAGTCCTTGGCACAATTTGGTCCCTAGAGACTCTTTGGCA
GAGGAGAGTATTGAAGAAGTTGGCATGTATTCCCTTACTAATACAGGTCA
GCTTTTTGTATGGCTTTCAAGATTAAAATCACACACACACACACACACAC
ACACACACACACACACACACACACACATAGAGAGAGAGAGAACCTTGCTA
CCCTCAACCTTTGTGAGAGTCAATACTAGTTCTATGACCTTGACCCTAAA
CTTTTCTGTCAGCTTTTTAAACCAACACGCTAACACAGGTTATAATGCCT
ACCCACCTAAGAATCACTTGGTGATCTGTCATATATGCCGTTTTTTAATA
TATAAATTTGTTAGGACCTTGTG
TTTATCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCAGAGGAATACCGAA
TGGCAGAGAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAA
ATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGC
TAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAA
GAGGAACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTC
TGGAAATCAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGA
GGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACAG
GTAAGAAGGACACATGCTCCACCATGTTCATAGCAGCCTTATTTATAATA
GCCAGAAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACA
GAAAATGTGGTACATCTACACAATGGAGTACTACTCCTCTTATTTAAAAG
AAGGAATTTATGAAATTCCCTAGCCAAATGGATGGGACCTGGAGGGCATT
CTCTCTGAATTGAGGTAACCACATTTCTCAAAAAAAATTCAATCGATAAT
GTAATCCCCGGAAAATGGGGGAATTTTATCCCTCCAACTTTAAGGAAAAC
CCCCGGAAATCAACAAAATTTTATTTTGGCTTTTTTCACTGTGATCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no448_b01.b1 MSMg01no448_b01.b1 CHROMAT_FILE:
MSMg01no448_b01.b1 PHD_FILE: MSMg01no448_b01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:11 2005
         (436 letters)



>mm_chr2_171858762_171859597
          Length = 836

 Score =  702 bits (363), Expect = 0.0
 Identities = 410/427 (96%), Gaps = 4/427 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggctgcaaaatcctaaggttgtagtgtggctgacatctccctttccctgttttgcttttg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 603 ggctgcaaaatcctaaggttgtagtgtggctgacatctccctttccctgttttgctcttg 544

                                                                       
Query: 61  gccctaaagaccaacaaagctggatttattgctcgaagcagcctgtgggtgtggtctcac 120
           ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||
Sbjct: 543 gccctaaagaccaacaaagctggatttatcgcttgaagcagcctgtgggtgtggtcccac 484

                                                                       
Query: 121 cttgtattcccattgagggccatgggcttttattcaccctcttggactctataaaccact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 cttgtattcccattgagggccatgggcttttattcaccctcttggactctataaaccact 424

                                                                       
Query: 181 gggcatcagtgtcttctgggcttagcaagctcctatattggttgacctggtggctataag 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 423 gggcatcagtgtcttctgggcttagcaagctcctatattggttgacctggtggctaaaag 364

                                                                       
Query: 241 tgtttaaaacagagatatatggccattgctcactattcttacacaagtccttggcacaat 300
           |||| ||||||||||||||||||||| |||||||||||| || |||||||||||||||||
Sbjct: 363 tgttgaaaacagagatatatggccatagctcactattctcacgcaagtccttggcacaat 304

                                                                       
Query: 301 ttggtccctagagactctttggcagaggagagtattgaagaagttggcatgtattccctt 360
           ||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct: 303 ttgatccctagagactctttggcaaaggagagtattgaagaagttggcatttattccctt 244

                                                                       
Query: 361 actaatacaggtcagctttttgtatggctttcaagattaaaatcacaca--c--acacac 416
           ||||||||||||||||||||||||||| |||||||||||||||||||||  |  ||||||
Sbjct: 243 actaatacaggtcagctttttgtatggttttcaagattaaaatcacacatgcttacacac 184

                  
Query: 417 acacaca 423
           |||||||
Sbjct: 183 acacaca 177


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 836
Length adjustment: 9
Effective length of query: 427
Effective length of database: 827
Effective search space:   353129
Effective search space used:   353129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)