BAC Information

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BAC

Clone NameMSMg01-448C07
Chromosome2 (Build37)
Map Location 102,214,194 - 102,214,567
singlet/doubletsinglet
Overlap geneTrim44
Upstream geneB230118H07Rik, Rag2, Rag1, LOC100042930, Traf6, 2600010E01Rik, LOC100043302, Commd9, Ldlrad3, LOC674202
Downstream geneFjx1, E430002G05Rik, Slc1a2, Cd44, Pdhx, Apip, Ehf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-448C07.T7 (MSMg01no448_c07.b1)MSMg01-448C07.TJ (MSMg01no448_c07.g1)
ACCAG536427AG536428
length718759
length of high quality
(start - end)
374 (71 - 444)---
definitionCHROMAT_FILE: MSMg01no448_c07.b1 PHD_FILE: MSMg01no448_c07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:18 2005CHROMAT_FILE: MSMg01no448_c07.g1 PHD_FILE: MSMg01no448_c07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTGCATTTTGCCCAAGATCAGGGGCGTTATCTAGACATGGTAGATCCC
AACTTTAATTAGCAGGATTTCCTAATATTTCATGGGTGTTGTAGTAGATG
ATATATATTAATTACTGTGCTGTGTTTCAAATCCATACCACTAAGTGCCA
AGGTTACAAAACAAAATAAACATGACTTCTACCATCCAGTATTCCTGCTT
ACAGCATTGTAAATAAAAGGTGCAGAAACGTCACTAATTCATAGAACTCT
TTAATCAAAGATGCTAGCTCACATGTAGTACTTGATAGTTGAGCTATCTC
AAGCCTTTAATTCAGGCGGTGGAATAAACACTGCCCAATAGATGTCTTGT
TGCAAGACAAGCACTAGGATGAAGTCTGGCTTGACTCTTGTATATAACAG
CAATATTATCTAGTAGAATTCCTACTAGTTATTGATTACCCATCATGAGC
CCTAAATGCATAACCTACATTTCTAACATTCCAATTATCACAGACTAGGT
TGTAGTCTGCTGATATGACATCATCTATGAACCCTGATCATAACGTTCTT
GCAATTACTTAATATTCGAACGCCATTCTTATATCTATCTAGCAAATTTC
ATGTTGCTCAACCGTTCTTGCCTCCCCTCCTTTACAGTATCTTTTAACAC
TGTTTATCACGAATAATG
ATGGGAGGGCGGGGGCGCTGGTCCAAAGGGGGTGACCTAAGAGTACCGCA
GGAATCTCCCTGAGGAAACTGAATGGCAGNAAGAAAAGGCAACCCCCTTG
GGGGGGNNGNNNGGNNGGGCGGGGNNNTNNNNNNNNNNNNNNNNTTTNNN
NNNTTNNNNGNNNGNNNNNNNNTTTNTTNGGNNNNGGGNNNNNNNNNNNN
NNNNNNNNNNNNNGNNNGGGGGTTTCCCAACCCACTCCCTTTTTAAAATT
CAATCCCAGGGGGAAAAAGGGGGGGNANNCCNCCCCANAAAAACCAAACC
CCCCCTGGGGGAAAAAATTTCCCCCACCCCCCACCCAGGTCCACAAAGCA
AANNNNCCCNNNNCCCCCTTNNNNNNNNAAAAAAGAGGGGGCCTTTTGAG
GCGGAGAAAACCCCCCCTCTAANNNNAATTTTTCCCCCGGGGGTGAGAAC
CCNGAGAAAAAAAAAGCCGCGGGGGCCGGGGGGNTTTGGGGGGAAAAAAA
AAAGAACCCTCCCCCTGGGTGGGGGGGAGGGGGGGGGCACCCCGCGGAGA
ACATTGGGGTTTTTGCGGCCAGAAACACACCCCCCTTTTTCTTCTCCCCG
CCCTGGGTCGGGGAACCACCCCCCGGAACATTCCTCACACACCCTAAAAA
TAAGGATGGNNTNNNCNNCTTNNTNNTTTNCGCTCTCTCCCGCCCGCTCC
CCCCTCACAACACACAANNCCCCCCCCCTGGAACACCCCCCCCCTCACCC
CCCGCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no448_c07.b1 MSMg01no448_c07.b1 CHROMAT_FILE:
MSMg01no448_c07.b1 PHD_FILE: MSMg01no448_c07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:18 2005
         (374 letters)



>mm_chr2_102213994_102214769
          Length = 776

 Score =  673 bits (348), Expect = 0.0
 Identities = 367/374 (98%), Gaps = 2/374 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggggcgttatctagacatggtagatcccaactttaattagcaggatttcctaatattt 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 caggggcgttatctagacatggtagatcccaaccttaattagcaggatttcctaatattt 260

                                                                       
Query: 61  catgggtgttgtagtagatgatatatattaattactgtgctgtgtttcaaatccatacca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catgggtgttgtagtagatgatatatattaattactgtgctgtgtttcaaatccatacca 320

                                                                       
Query: 121 ctaagtgccaaggttacaaaacaaaataaacatgacttctaccatccagtattcctgctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctaagtgccaaggttacaaaacaaaataaacatgacttctaccatccagtattcctgctt 380

                                                                       
Query: 181 acagcattgtaaataaaaggtgcagaaac--gtcactaattcatagaactctttaatcaa 238
           |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||
Sbjct: 381 acagcattgtaaataaaaggtgcagaaacatgtcactaattcatagaactctttaatcaa 440

                                                                       
Query: 239 agatgctagctcacatgtagtacttgatagttgagctatctcaagcctttaattcaggcg 298
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agatgcaagctcacatgtagtacttgatagttgagctatctcaagcctttaattcaggcg 500

                                                                       
Query: 299 gtggaataaacactgcccaatagatgtcttgttgcaagacaagcactaggatgaagtctg 358
           |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 501 gtggaataaacactgcccaataaatgtcttggtgcaagacaagcactaggatgaagtctg 560

                         
Query: 359 gcttgactcttgta 372
           |||||| |||||||
Sbjct: 561 gcttgattcttgta 574


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 776
Length adjustment: 9
Effective length of query: 365
Effective length of database: 767
Effective search space:   279955
Effective search space used:   279955
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)