BAC Information

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BAC

Clone NameMSMg01-448L04
Chromosome2 (Build37)
Map Location 64,937,051 - 64,937,413
singlet/doubletsinglet
Overlap geneCobll1
Upstream geneLOC620544, LOC667291, Grb14
Downstream geneLOC383705, 9330158F14Rik, Scn3a, Scn2a1, A330102K23Rik, Galnt3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-448L04.T7 (MSMg01no448_l04.b1)MSMg01-448L04.TJ (MSMg01no448_l04.g1)
ACCAG536849AG536850
length773769
length of high quality
(start - end)
363 (70 - 432)240 (79 - 318)
definitionCHROMAT_FILE: MSMg01no448_l04.b1 PHD_FILE: MSMg01no448_l04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:03 2005CHROMAT_FILE: MSMg01no448_l04.g1 PHD_FILE: MSMg01no448_l04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACAGAATACGCGGAATTC
TCTTGAGGTTATCAAAAATCCTGGACACTTGCAGAGGAGTGCTGAGCTGA
TATGCTGCCATCCGAAGTCTGCACAGTCTCATCAGCCCTGGGGTCAGATG
AATTACTGACTTCGTGATTCCCATCAAAAGTGTCGCGGGCAGGGGTGGCC
TGAATTGCTGCATCCTGCATTTTCGTCTTCTCCACACCTGGTTGATTCAA
TTTTTGATCTGGTCCTGGTGATGCTGTTAGATGATTTTCCCTCGAACTTT
TAACACTGTCCATTCTTTATGCTGGAGAGCCTGACAATCTATCAGTTTCC
ATGTCGCTGGCTTTCTTCAGAGCTTCGCCTTCGCCTTCTATGGTGGTTTC
CATTTTCCCCGGTCTGCTTTTCACATAATCTGTGCTTGTGGCACAGACCA
TGATTTCATTTTGAACTACTGAGAGGAAAAACTAATACCGCCAAGAATGT
ATTTTAAAATGAAGAAATCATTTTCTCTCTGTGTGTCACCTATCTATATA
TGGATAATTTGAGTGCTACAATCCTTTTTCAGCCTATTAACACCCCGTTA
TTTATTTGATTCACAAATTTATCAATGTCGTGCGCCTTCCGCATTATATT
GCCTTTTTGTACTAACCCTTCCCAAATCTTACACGGTTTTCCTTTTCTCA
ACTTTTCTACCTGGCCTCTAACTCTTCGAGTTGCGATTTTTTAAGAAACT
CCCGCTTCGCTGGCCTTCATCTA
AAAACCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAGGGAGCTGCTCGTTCTCAG
GTTCCGCTGGAATCCTGAAGAAGTTGGTTCTAATGTCAGCAAAGGAGTTC
AGCAGCAGCAGGGTAAATGAAGTTGCCAGTCAGAGTGGAGGTAAAGAGCT
AAGAAAAAGTCTCCTTCCACCATGTTCTTTTGTCTGGGCTGGCACCAGCA
GGTTTTGCCCATATTTAGGGTGGATCTTCCTGCTTCATATAGTCTTACCA
AGAAAATCCCTCACAGGTGTATATCCAGCAACCTGGATTTTCATCGACTC
AAGATGCAGTCAAGTTGACAGCTGAGATTAGCCATCACACAATTTTATTA
AACCACAACACACACTGAGCTCCTTCTCCCTTGTGGAGGTATATTTTATC
ATATGCGAGGTATCAGTTAGTCTCTTACAGCGACATGTAAAGTGACTGTT
ACCCTGACACTTTTCTCCATTGAACGAATCACTCTGTACCTTTTTACTCT
TTCTGTTCTCCTGTCTCCTCAGGTCTAAATCGCGCCTTCCCAACTTCTCG
TCTATCCCTTTATAACATTTATTTTTTTTTTCCGCTTCCCCTCTGCGGGC
CCCGTATTTATCATTTCTACTCTTACCCAATTATTATCTTTTGTTTTTCC
CTTGCCCACCCTTAACTTATTTTTTTTTTCCGCTACACATTACTTTTTTC
ATTCTCTTTATCTCCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no448_l04.b1 MSMg01no448_l04.b1 CHROMAT_FILE:
MSMg01no448_l04.b1 PHD_FILE: MSMg01no448_l04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:03 2005
         (363 letters)



>mm_chr2_64936851_64937613
          Length = 763

 Score =  632 bits (327), Expect = 0.0
 Identities = 354/363 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctggacacttgcagaggagtgctgagctgatatgctgccatccgaagtctgcacagtct 60
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctggagacttgcagaggagtgctgagctgatatgctgccatccgaagtctgcacagtct 260

                                                                       
Query: 61  catcagccctggggtcagatgaattactgacttcgtgattcccatcaaaagtgtcgcggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 catcagccctggggtcagatgaattactgacttcgtgattcccatcaaaagtgccgcggg 320

                                                                       
Query: 121 caggggtggcctgaattgctgcatcctgcattttcgtcttctccacacctggttgattca 180
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 caggggtggcctgaattgctgcatcctgcattttcgtcttctctacacctggttgattca 380

                                                                       
Query: 181 atttttgatctggtcctggtgatgctgttagatgattttccctcgaacttttaacactgt 240
           ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct: 381 atttttgatctggtcctggcgatgctgttagatgattttccctcgaacttttaacattgt 440

                                                                       
Query: 241 ccattctttatgctggagagcctgacaatctatcagtttccatgtcgctggctttcttca 300
           |||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccattctacatgcaggagagcctgacaatctatcagtttccatgtcgctggctttcttca 500

                                                                       
Query: 301 gagcttcgccttcgccttctatggtggtttccattttccccggtctgcttttcacataat 360
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 501 gagcttcgccttcgccttctatggtggtttccattttccccggtctgtttttcacataat 560

              
Query: 361 ctg 363
           |||
Sbjct: 561 ctg 563


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 763
Length adjustment: 9
Effective length of query: 354
Effective length of database: 754
Effective search space:   266916
Effective search space used:   266916
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)