BAC Information

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BAC

Clone NameMSMg01-448O11
Chromosome2 (Build37)
Map Location 44,624,704 - 44,625,080
singlet/doubletsinglet
Overlap geneGtdc1
Upstream geneArhgap15
Downstream geneZeb2, LOC100042661, LOC100041337
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-448O11.T7 (MSMg01no448_o11.b1)MSMg01-448O11.TJ (MSMg01no448_o11.g1)
ACCAG537006AG537007
length731738
length of high quality
(start - end)
377 (72 - 448)400 (81 - 480)
definitionCHROMAT_FILE: MSMg01no448_o11.b1 PHD_FILE: MSMg01no448_o11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:20 2005CHROMAT_FILE: MSMg01no448_o11.g1 PHD_FILE: MSMg01no448_o11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TACACGTCGCACTCTGAGCATGTAAAAGCGCTCACACACACAAAATAAAA
TGAAAACTTACCAGAGGACAAATTATAAATATACTATTATTATAATGTTA
TTCAACAAGGAGCATAGAAAGACTATAGGAAGGTTATATATTTATATGTC
TTGGGTTTATGGATTTTTATAGTTAATATTAAAATAGTTTATCAAGTCAT
TTTACATTATATTTTATAATTTGCACAGTATTGGGGCTGGAGAGATTGTT
CAGCAGTTAATATCACTGGCTACTCTTACAGAAGACTCATGCTCTATTTC
CAGCACCTACTAAGCTGTTCACTCCAGTGCAAGAGGATCTGACACACTCC
TCTGCCTCCATAAGCAACGCACATGAACGTGATGCACAAATATACACAGA
GTTAACACATTTATACATGCACCAATAATAATAGGCACGCTAACAATATC
ATGTATCAACAATAATACTTTTAGCATAACATGTATATCGTCTTTTAAAT
TACTTAAACTAACGATAATTTCTACTTACTTCTTGAGTAAAGAATGTTAT
TATATATGCTGCTATGAAATAGAATTCCTATCCCATGTCCTATATCCTGT
ATTCCCTATGTCACATTAATCCTCTCTCTAAGGGACACGTAATTTTATAG
GCATTTATCCATTTTCTTTTTACCAATACCC
NNTTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCTTTATGTCCTCTACCA
TCATCATGAGATATGCTTTTAAATCCAGGTCTACCTTTTCAGGTGTGTTA
GGGTGTCCTGGACTGGGCGAAGTGGGCGTTCTGGGTTCTGATGATGGTGA
GTGGTCCTGGTTTCTGTTAGTAGGATTCTTATGTTTACCTTTCGCCATCT
GGCAATCTCTGGAGTTAGTTGTTATAGTTGTCTTTGTTAAGAGATTGTTC
CTCTGTTGATTTTGTTATTTTCTATAAGCAGGCGTGGGAGACAAGCTCTC
TCCTCTGAGTTTCAGTGGTCAGAGCAGTCTCTGCAGGCAAGCTCTCCTCT
TTCGGGGAAGGTGTACAGTTATCTGGTGTTTGGACCTCCTCCTGGCTGAA
GGTGAAGGCCCATAACAGGATCTTTCCCAGAAGCTGTGTTGCTTTGGCCA
GCAAGGTGGCCGGTTGTCTGTAGTCTAATAGTCCTCCCCCCCAAACCCTG
GGTCTCTGCCTGTTTTTTGTCCGTCCCCTGTCCTCCTATAGGTCTCGTCT
CCCACCTTTTGTTATTTCTCTCCAATTTTTTTTCTCTTTCTTCCTACAGC
ATCGCTTCTCCCAATTATTAATTTTTTTCTTTCCTTTCTTTTGTTTTTTT
TTTTTCTTCCCTTGATTTTACTCCCCTCCCCCTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no448_o11.b1 MSMg01no448_o11.b1 CHROMAT_FILE:
MSMg01no448_o11.b1 PHD_FILE: MSMg01no448_o11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:20 2005
         (377 letters)



>mm_chr2_44624504_44625280
          Length = 777

 Score =  675 bits (349), Expect = 0.0
 Identities = 370/377 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtaaaagcgctcacacacacaaaataaaatgaaaacttaccagaggacaaattataaata 60
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtaaaagtgctcacacacacaaaataaaatgaaaacttaccagaggacaaattataaata 260

                                                                       
Query: 61  tactattattataatgttattcaacaaggagcatagaaagactataggaaggttatatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tactattattataatgttattcaacaaggagcatagaaagactataggaaggttatatat 320

                                                                       
Query: 121 ttatatgtcttgggtttatggatttttatagttaatattaaaatagtttatcaagtcatt 180
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttatacgtcttgggtttatggatttttatagttaatattaaaatagtttatcaagtcatt 380

                                                                       
Query: 181 ttacattatattttataatttgcacagtattggggctggagagattgttcagcagttaat 240
           ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| 
Sbjct: 381 ttacattatattttataatttgcacagtactggggctggagagatggttcagcagttaag 440

                                                                       
Query: 241 atcactggctactcttacagaagactcatgctctatttccagcacctactaagctgttca 300
           | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 441 agcactggctactcttacagaagactcatgctctatttccagcacctactaggctgttca 500

                                                                       
Query: 301 ctccagtgcaagaggatctgacacactcctctgcctccataagcaacgcacatgaacgtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctccagtgcaagaggatctgacacactcctctgcctccataagcaacgcacatgaacgtg 560

                            
Query: 361 atgcacaaatatacaca 377
           |||||||||||||||||
Sbjct: 561 atgcacaaatatacaca 577


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 777
Length adjustment: 9
Effective length of query: 368
Effective length of database: 768
Effective search space:   282624
Effective search space used:   282624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)