BAC Information

Click to search

BAC

Clone NameMSMg01-449A01
Chromosome2 (Build37)
Map Location 126,844,337 - 126,844,812
singlet/doubletsinglet
Overlap geneAp4e1
Upstream geneFgf7, Dtwd1, Atp8b4, Slc27a2, Hdc, Gabpb1, Usp8, LOC100043714, Usp50, Trpm7, 2010106G01Rik
Downstream geneBlvra, Ncaph, 1700041B20Rik, 1810024B03Rik, LOC100043408, Ascc3l1, Ciao1, Tmem127, ENSMUSG00000074822, Stard7, Dusp2, Astl, Adra2b, A530057A03Rik, Fahd2a, Kcnip3, Prom2, Zfp661, Mrps5, Mal, LOC668892, Mall, Nphp1, 1500011K16Rik, Bub1, Acoxl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-449A01.T7 (MSMg01no449_a01.b1)MSMg01-449A01.TJ (MSMg01no449_a01.g1)
ACCAG537081AG537082
length739746
length of high quality
(start - end)
586 (52 - 637)472 (85 - 556)
definitionCHROMAT_FILE: MSMg01no449_a01.b1 PHD_FILE: MSMg01no449_a01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:28 2005CHROMAT_FILE: MSMg01no449_a01.g1 PHD_FILE: MSMg01no449_a01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTCACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGAATC
CGCGGAATTCCCTCAGTGTATCATCTTTATTGCTTCTATTTCCACTTTTA
AGGTCTTGTACAGTTTCATTTTTCTCCTTTACCTGATTGATTATACTTTC
TGGTATAACTTTAAGGGGTTTGCTTCCTCTTTAAAGACCACTACCTGTTT
TGTTCTGTTTTCCTGTATTTCTTTAAGGGATTATTCATTTCCTCAGTAAA
GGCCTCTATCATCTTCATAAGACCTAATAGAACAGAAAGTGGAGAATAGC
CTTAAACTCATTCTGACAGAAGAAAACTTTCTGAACAGAATACCAATGGC
TCAGGTTCTAAGATCAACAATTGATTAATGGGACCTCATGAAACCTCAAA
GCTTCTGTAAGGCAAAGGAACCACTGTCAACAGGACAAAGCAGTAGCCTA
CAGATTGCGAAAGGACCTTCACCAACCATATGTCTGACAGAGAGGTAGAA
CTCAAGAAGTTAAATAGCAACAACCCAAGTTAACCCAATTTTAAAATGGG
GCACAAAACTAAACAAAGATGTCTCAACATGGGAATCTCAAATGGCTGAG
GTGCACTTAAAGAAATGTTCAAAGTCCTTAATCATCAGGAAAATGCTAAT
TTCAACAGCTCTTACACTGCTAAGAATAGCTAAGATCGAAAACTCAAGCG
GTATAACATGCTGCTGAGGATGTGGAAACAAGGCAATAC
GATCTTCACGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTGAGGCAAGGGTTA
TAGTTATTGACACATAGTAACTAATAAATATCATTGGCAATGTGAAAAGG
GGCCAGAAATGCCATAAAGCATGTGGCATTGGCACATGTGACTATGGCAT
TTGTCGTGATATCAATATATTCATTCTTCAGTCCTAACGCATAATTTTTG
AAATAGAAATGCTTCATTAAGCTGGTGAGTGCATTTAATGTGGTAGACAG
TCTGTCTTTCCTCAATAACTGTTACTTCCTCAACACTGTCTTTAGTTGAA
AAAAAAAATCTGAGTAGCTTGACCGTATCAGGCTGGCTTAGATAGCTTAT
ACAACAGTGACAGATGCTCCTCAGTGGTTCCGTGCTAACGCAATAACTAT
GCTCTTGATAATTGTATGTTAGCTCTAAGGTACAGATTAATTTGAGGGAT
GGTGCAGGTTTGCACGAGAGCTCTGTCATCCGCAGGGCTTTAGTTTGGTA
TATGTTGCAGAATCTGCTGTTCTGAATACGCAGGATGAAGGACGTCTGAA
CTCTTCAGTGACGTTTGTTAAACTTTGTATTTTACACTTTGTTTTTAACG
CTACCCGCTAAACTGACATGTTATATACTTAAAAACCTCGCACAATGCCT
TTTATTTAATAAGAATAGAATTTCTTTCCAACTAATGTAACTTTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no449_a01.g1 MSMg01no449_a01.g1 CHROMAT_FILE:
MSMg01no449_a01.g1 PHD_FILE: MSMg01no449_a01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:28 2005
         (472 letters)



>mm_chr2_126844137_126845012
          Length = 876

 Score =  870 bits (450), Expect = 0.0
 Identities = 468/476 (98%), Gaps = 4/476 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtgaggcaagggttatagttattgacacatagtaactaataaatatcattggcaatgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtgaggcaagggttatagttattgacacatagtaactaataaatatcattggcaatgtg 260

                                                                       
Query: 61  aaaaggggccagaaatgccataaagcatgtggcattggcacatgtgactatggcatttgt 120
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaagggggcagaaatgccataaagcatgtggcattggcacatgtgactatggcatttgt 320

                                                                       
Query: 121 cgtgatatcaatatattcattcttcagtcctaacgcataatttttgaaatagaaatgctt 180
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 cgtgatatcaatatattcattcctcagtcctaacgcataatttttgaaatagaaatgctt 380

                                                                       
Query: 181 cattaagctggtgagtgcatttaatgtggtagacagtctgtctttcctcaataactgtta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cattaagctggtgagtgcatttaatgtggtagacagtctgtctttcctcaataactgtta 440

                                                                       
Query: 241 cttcctcaacactgtctttagttgaaaaaaaaaa----tctgagtagcttgaccgtatca 296
           ||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||
Sbjct: 441 cttcctcaacactgtctttagttgaaaaaaaaaaaaaatctgagtagcttgaccgtatca 500

                                                                       
Query: 297 ggctggcttagatagcttatacaacagtgacagatgctcctcagtggttccgtgctaacg 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 501 ggctggcttagatagcttatacaacagtgacagatgctcctcagtggttccatgctaacg 560

                                                                       
Query: 357 caataactatgctcttgataattgtatgttagctctaaggtacagattaatttgagggat 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 561 caataactatgctcttgataattgtatgttagctctaaggtacagattaatttgatggat 620

                                                                   
Query: 417 ggtgcaggtttgcacgagagctctgtcatccgcagggctttagtttggtatatgtt 472
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggtgcaggtttgcacgagagctctgtcatccgcagggctttagtttggtatatgtt 676


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 876
Length adjustment: 10
Effective length of query: 462
Effective length of database: 866
Effective search space:   400092
Effective search space used:   400092
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)