Query= MSMg01no449_d01.b1 MSMg01no449_d01.b1 CHROMAT_FILE:
MSMg01no449_d01.b1 PHD_FILE: MSMg01no449_d01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:44 2005
(572 letters)
>mm_chr2_27861312_27862283
Length = 972
Score = 1009 bits (522), Expect = 0.0
Identities = 558/570 (97%), Gaps = 2/570 (0%)
Strand = Plus / Minus
Query: 4 ggaattccttctt-ctttgtcacacagaaggaaattgtgtgcaacaggaggggacacaga 62
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 ggaattccttcttccaatgtcacacagaaggaaattgtgtgcaacaggaggggacacaga 713
Query: 63 tgcttcgttagctcaccccatccttcctgcactccactccctctcttcgaagtcagtctg 122
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 712 tgcttcgttagctcaccccatccttcctgcactccactccctctctttgaagtcagcctg 653
Query: 123 tcctctccgtgctcgtacgtgctctggcaggtccagggcttccaagcttctggccctgca 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 tcctctccgtgctcgtacgtgctctggcaggtccagggcttccaagcttctggccctgca 593
Query: 183 tgccctgtcaggctgggagtttgcagagaccccagacactctctcaacattttcctcttg 242
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 592 tgccctgtcaggctgggagtttgcagagaccccagacactctctcaacgttttcctcttg 533
Query: 243 ctagagctattctgggagatagtgagcttgccctgcttatggcggttcttgcaaggtttc 302
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 532 ctagagctattctgggagatagtgagcttgccctgcttagggcagttcttgcaaggtttc 473
Query: 303 tgcttaactattaagtcttgggaaacaccgagcttccttcaggtgagtctgtgagctcca 362
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 tgcttaactgttaagtcttgggaaacaccgagcttccttcaggtgagtctgtgagctcca 413
Query: 363 cgtgtcctgaacctccaagaacttctgtgttgcacacagaatccagctggctctgtgtcc 422
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 cgtgtcctgaa-ctccaagaacttctgtgttgcacacagaatccagctggctctgtgtcc 354
Query: 423 tgggctcctcactaaaaatgccacaatgctatcaactgccaacagtacgttgcaaggctc 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 tgggctcctcactaaaaatgccacaatgctatcaactgccaacagtacgttgcaaggctc 294
Query: 483 tccatggtactgatgtcccagtgtggtctgaatgcctttcctcctagtgagcccagagag 542
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 293 tccatggtactgatgtcccagtgtagtctgaatgcctttcctcctagtgagcccagagag 234
Query: 543 catgacacagagagcatagagtgtcactag 572
|| |||||||||||||||||||||||||||
Sbjct: 233 caggacacagagagcatagagtgtcactag 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space: 540644
Effective search space used: 540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no449_d01.g1 MSMg01no449_d01.g1 CHROMAT_FILE:
MSMg01no449_d01.g1 PHD_FILE: MSMg01no449_d01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:44 2005
(468 letters)
>mm_chr2_27693395_27694263
Length = 869
Score = 868 bits (449), Expect = 0.0
Identities = 461/465 (99%), Gaps = 1/465 (0%)
Strand = Plus / Plus
Query: 1 cttcttcactggatttcagcagaatccacatgtttttgaaataaaagcctggctctaggc 60
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 cttcttcactagatttcagcagaatccacatgtttttgaaataaaagcccggctctaggc 260
Query: 61 tgtactgaaaatcccaggcaagaactccctccacattctgaggcttagctttgcctcttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtactgaaaatcccaggcaagaactccctccacattctgaggcttagctttgcctcttt 320
Query: 121 ttgcacagctaggttccatgccgccggttcttgcaaccacccgttgagatgcagtctgaa 180
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgcacagctagtttccatgccgccggttcttgcaaccacccgttgagatgcagtctgaa 380
Query: 181 caatgcgcagtcaggcccacgtaatcccaaataattaaaagcacactcgccattcattga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caatgcgcagtcaggcccacgtaatcccaaataattaaaagcacactcgccattcattga 440
Query: 241 gttggggccacctagacaagccctctgttgctgggacttaccaatggctgaggcactcaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttggggccacctagacaagccctctgttgctgggacttaccaatggctgaggcactcaa 500
Query: 301 agaagcggcgggccaggtggcaggcacagtggtggagttgctgcctgtgtgatgggggaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agaagcggcgggccaggtggcaggcacagtggtggagttgctgcctgtgtgatgggggaa 560
Query: 361 gaggctgagaaagaggttgcctcagatgctgcatggtgacaaggggctgccagaggccct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaggctgagaaagaggttgcctcagatgctgcatggtgacaaggggctgccagaggccct 620
Query: 421 tgtggcatggctccttctggacttacttcc-tttcacagcctgtt 464
|||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 621 tgtggcatggctccttctggacttacttccctttcacagcctgtt 665
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 869
Length adjustment: 10
Effective length of query: 458
Effective length of database: 859
Effective search space: 393422
Effective search space used: 393422
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
