BAC Information

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BAC

Clone NameMSMg01-449D13
Chromosome2 (Build37)
Map Location 65,298,160 - 65,298,486
singlet/doubletsinglet
Overlap geneScn3a
Upstream geneLOC620544, LOC667291, Grb14, Cobll1, LOC383705, 9330158F14Rik
Downstream geneScn2a1, A330102K23Rik, Galnt3, LOC620893, Ttc21b, Scn1a, LOC100039486, LOC383706
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-449D13.T7 (MSMg01no449_d13.b1)MSMg01-449D13.TJ (MSMg01no449_d13.g1)
ACCAG537247AG537248
length737739
length of high quality
(start - end)
396 (342 - 737)327 (338 - 664)
definitionCHROMAT_FILE: MSMg01no449_d13.b1 PHD_FILE: MSMg01no449_d13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:47 2005CHROMAT_FILE: MSMg01no449_d13.g1 PHD_FILE: MSMg01no449_d13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGA
AGGCGCGGAATTCAGAACTTTTTACATAGAAAGAACAGAAGTACCAGTGA
GTACAGCTTTACAAGGTAAGTCTGGTCTTGAACTTTCTAACGAAATTCAA
GACAGTCTATCAGAAGTAAAGTGGAAAATAGCTTTACAAGGTATGTTTGG
CCTTGAATTTTTTCTAGTGTTAGGAGCCCTTTTGTTCTTTTTCACATGTT
ATCAAGTGGTTAAGGCATGGCGGATTCTGGATGAAGTTCAGGACAATCTA
TCAGAAGTAAAGCGGGGAGAGAGAATAGGATCTAATAGTAAATATGGTTC
ACAAAATAAGTATACAGGCCTTTCCAAGGGTCTTGAACCCGAGGAAAAGT
TTAGGTCAGGTAAGAATACCTGGGGAGAGATTAGAAGGAAGGAGAAGGAA
AAAGAAAAGAAAAAAGATCAATTAGAGGAGCCAGTTCTTAGTAGTTCTGA
ATCAGATGAAAAGGCTATTAGGGCCTGGAAGGCGCTCTCCCGAGCAGGTG
AAGCCACTGGACAATAATGACAGAGGCAGGCTCTTGCAGCCTACAAGGTC
TTATTGTCCACCCTGGAGTTGTAGATCAGGATTGTAAAGGGGAACTTCAG
GTTCTCTGTTCTTGTCCTCAAGTTGTCTTTTCTATATCACAAGGGGACAA
AATAGCTCAACTAATAATTTTGCCAAGCCTACATGGG
AAAANNACAAGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTTCCGAAAATCCACCCCAGAAAAGACAGATG
GGAGTTCCTCTACCACCTCTCCTCCTTCCTATGACAGTGTAACAAAACCA
GATAAGGAAAAGTTTGAGAAAGACAAACCAGAAAAAGAAAGCAAAGGGAA
AGAGGTCTGAGAGAATCAAAAGTAAAAAAACAAAACAAAAAAAATTTCAA
AAATTTAAAAAGTATACAAAGAAATGTCTTTGTAATCAATTGTTTACAGC
CTCTGAAGGTAAAGTGTCCGTGTCATCTGGTCNCTAAGGAGAGGTCCATG
CCAAACTGACTGTTTCAACAAATACTCCAGGTCAGTGCCTATACCAGACA
GTGACCTCTGTCACTGCCACTCTGCGAGACAGGGTATCAACATTGACAAG
AGGTTGCTGCTTCCATTACCAGCTGACACTGCTGAGGGGAACTCCATTGT
GAAAGTGACCGTCATCACGCCACCAAACACCATTAGTACAACCAACGCTC
CTGTTATCTATTTTTAACATTCACATTGCCATATTTTTACAAAATCTGCC
CCAGTGTATCTTCCTGGTCCCCACTTCATAGTCTGTTCATAATACTATGT
CACTATTTTTGTAAATGATTTTATGTTAAGGGAAAATATATATATATATA
AATCCCATGTTGCTAAGACCACAAGTTTCTCCAGTAATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no449_d13.g1 MSMg01no449_d13.g1 CHROMAT_FILE:
MSMg01no449_d13.g1 PHD_FILE: MSMg01no449_d13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:47 2005
         (327 letters)



>mm_chr2_65297960_65298686
          Length = 727

 Score =  617 bits (319), Expect = 0.0
 Identities = 325/327 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggagaggtccatgccaaactgactgtttcaacaaatactccaggtcagtgcctataccag 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 527 ggagaggtccatgccaaactgactgtttcaacaaatactcaaggtcagtgcctataccag 468

                                                                       
Query: 61  acagtgacctctgtcactgccactctgcgagacagggtatcaacattgacaagaggttgc 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 467 acagtgacctctgtcactgccactctgtgagacagggtatcaacattgacaagaggttgc 408

                                                                       
Query: 121 tgcttccattaccagctgacactgctgaggggaactccattgtgaaagtgaccgtcatca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 tgcttccattaccagctgacactgctgaggggaactccattgtgaaagtgaccgtcatca 348

                                                                       
Query: 181 cgccaccaaacaccattagtacaaccaacgctcctgttatctatttttaacattcacatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 cgccaccaaacaccattagtacaaccaacgctcctgttatctatttttaacattcacatt 288

                                                                       
Query: 241 gccatatttttacaaaatctgccccagtgtatcttcctggtccccacttcatagtctgtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 gccatatttttacaaaatctgccccagtgtatcttcctggtccccacttcatagtctgtt 228

                                      
Query: 301 cataatactatgtcactatttttgtaa 327
           |||||||||||||||||||||||||||
Sbjct: 227 cataatactatgtcactatttttgtaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 727
Length adjustment: 9
Effective length of query: 318
Effective length of database: 718
Effective search space:   228324
Effective search space used:   228324
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)