Query= MSMg01no449_h12.b1 MSMg01no449_h12.b1 CHROMAT_FILE:
MSMg01no449_h12.b1 PHD_FILE: MSMg01no449_h12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:06 2005
(553 letters)
>mm_chr2_163179725_163180678
Length = 954
Score = 1002 bits (518), Expect = 0.0
Identities = 545/558 (97%), Gaps = 9/558 (1%)
Strand = Plus / Plus
Query: 1 gctcctggggcctggcagacatgtccccagcttcccatcacctccactgagaccctgcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gctcctggggcctggcagacatgtccccagcttcccatcacctccactgagaccctgcag 260
Query: 61 ggagaggctccagagggatccctcttgcacacaaccagaaatcacacttctggttccaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggagaggctccagagggatccctcttgcacacaaccagaaatcacacttctggttccaaa 320
Query: 121 ggctgcctgagtggcaaaaccaatgtaggccaggccaggcaccaggttccagaagagatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggctgcctgagtggcaaaaccaatgtaggccaggccaggcaccaggttccagaagagatg 380
Query: 181 ttcaccgtcaccgtctctcagccgagcaacagctataatgttgagtccttgtgtgggggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcaccgtcaccgtctctcagccgagcaacagctataatgttgagtccttgtgtgggggg 440
Query: 241 atgttggatttt----ctacagccactgtgggcagcacactgtcaggggacctatcccag 296
|||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgttgga----aagcctacagccactgtgggcagcacactgtcaggggacctatcccag 496
Query: 297 atgtgcctgctgagtgacagatgacctgggtttcccccttattttttt-attacatttat 355
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 497 atgtgcctgctgagtgacagatgacctgggtttcccccttattttttttattacatttat 556
Query: 356 ttatgatttgataggcatgtgtgcacatgtgtgtgatcatgtgcattatgcgtgcatcca 415
|||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 557 ttatgatttgataggcgtgtgtgcacacgtgtgtgatcatgtgcattatgcacgcatcca 616
Query: 416 ttcatatgaatgctcaagtgtacttgtctagaggcaagaggtcagccctgtttaccatcc 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ttcatatgaatgctcaagtgtacttgtctagaggcaagaggtcagccctgtttaccatcc 676
Query: 476 ttctgctgctatctaccttttttgagacaggatctctcactggcctggagtttcccaaag 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ttctgctgctatctaccttttttgagacaggatctctcactggcctggagtttcccaaag 736
Query: 536 taggctaggctggctggc 553
||||||||||||||||||
Sbjct: 737 taggctaggctggctggc 754
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 954
Length adjustment: 10
Effective length of query: 543
Effective length of database: 944
Effective search space: 512592
Effective search space used: 512592
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no449_h12.g1 MSMg01no449_h12.g1 CHROMAT_FILE:
MSMg01no449_h12.g1 PHD_FILE: MSMg01no449_h12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:06 2005
(540 letters)
>mm_chr2_163355229_163356169
Length = 941
Score = 969 bits (501), Expect = 0.0
Identities = 531/541 (98%), Gaps = 1/541 (0%)
Strand = Plus / Minus
Query: 1 ctgtaagcctagcagtggttaccagtgaacacgcctttaatcccagcacttgagaggaaa 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 881 ctgttagcctagcagtggttaccagtgaacacgcctttaatcccagcacttgagaggaaa 822
Query: 61 aaacagggggatctctgagttcgagactagttagggacagccagtgctacagagagaaac 120
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 821 aaacagggggacctctgagttcgaggctagttagggacagccagtgctacagagagaaac 762
Query: 121 cttgtcttaaaaaaataaaacaaaacaaagcaaaacaacaaaaacaaaaaaggaatttgt 180
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 761 cttgtcttaaaaaaataaaacaaaacaaagtaaaacaacaaaaacaaaaaaggaatttgc 702
Query: 181 tggttccaatgatcccaaagagcaagccggaatcaagagctgggacaaaaacttggaccc 240
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 tggttccaatgatccaaaagagcaagccggaatcaagagctgggacaaaaacttggaccc 642
Query: 241 agagtaaa-tccttgctatgtgctatgattgtcctaccagggactatcctgatggatcca 299
|||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 641 agagtaaagaccttgctatgtgctatgattgtcctaccagggacaatcctgatggatcca 582
Query: 300 aatgttagcttcttgtcactgggggtcttggacacaagcctgggaaccatgatgccaaga 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 aatgttagcttcttgtcactgggggtcttggacacaagcctgggaaccatgatgccaagg 522
Query: 360 aagatgggttgtggattccagaagcaaattcttccagaaagcaaatatctcaaatgaaat 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 aagatgggttgtggattccagaagcaaattcttccagaaagcaaatatctcaaatgaaat 462
Query: 420 acaaccaaactccagcgcattgggggaactgggtctccacgcgtaaaaggatgaggttga 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 acaaccaaactccagcgcattgggggaactgggtctccacgcgtaaaaggatgaggttga 402
Query: 480 cgagctggacgtagtggtgcgtttggaagggaagaaagagcagaggttcaagatcattcc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 cgagctggacgtagtggtgcgtttggaagggaagaaagagcagaggttcaagatcattcc 342
Query: 540 a 540
|
Sbjct: 341 a 341
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 941
Length adjustment: 10
Effective length of query: 530
Effective length of database: 931
Effective search space: 493430
Effective search space used: 493430
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
