Query= MSMg01no449_p11.b1 MSMg01no449_p11.b1 CHROMAT_FILE:
MSMg01no449_p11.b1 PHD_FILE: MSMg01no449_p11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:43 2005
(550 letters)
>mm_chr2_61381527_61382477
Length = 951
Score = 984 bits (509), Expect = 0.0
Identities = 538/549 (97%), Gaps = 5/549 (0%)
Strand = Plus / Plus
Query: 5 gaattctgtatg--ttcctaactgatattagggagaatgaaaatctgtgactgttacaga 62
|||||||||| | || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgtaggactt--taactgatattagggagaatgaaaatctgtgactgttacaga 262
Query: 63 gccgatcttcaaaataatacccacgtcactctgatccacttacacatcgcccctcagaag 122
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 263 gccggtcttcaaaataatacccaagtcactctgatccacttacacatcgcccctcagaag 322
Query: 123 tggtgccttggtttcctaaccccaaccaaagccaggccacccgaggaagaagtcctcttt 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tggtgccttggtttcctaaccccaaccaaagccaggccacccgaggaagaagtcctcttt 382
Query: 183 agaaaactcgggaaagcaaaagcatccttaaccctcagacaaacaagttcttcctcaaac 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 agaaaactcgggaaagcaaaagcatccttaaccctcagacaaacaagttcttcctcaaac 442
Query: 243 caccttactaggattccaaagtattaagagcctggtctctgctggctgcagaaacatttc 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 caccttactaggattccaaagtattaagagcctggtctctgctggctgcagaaacatttc 502
Query: 303 tcatcaattccaaaagtcaaaagtgaagggaagagaacaaaaattaaa-gccgccttact 361
||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 503 tcatcaattccaaaagtcaaaagtgaagggaagagaacaaaaaataaaagccgccttact 562
Query: 362 ccttctacagtgaatctttggggccagccagacggctcagtggataaagttatcagagcc 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ccttctacagtgaatctttggggccagccagacggctcagtggataaagttatcagagcc 622
Query: 422 tgagtctgatgcctggacccacgtgaccggagaagagaagcagttctcaagagttatcct 481
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 623 tgagtctgatgcctggacccacgtgaccagagaagagaagcagttctcaagagttatcct 682
Query: 482 ctcacgtccacatgactgcctgacatgtagggaataagtaaataaatgagatataataat 541
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 683 ctcacgtccacatgactgcctgacacgtagggaataagtaaataaatgagatataataat 742
Query: 542 atctctgcc 550
|||||||||
Sbjct: 743 atctctgcc 751
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 951
Length adjustment: 10
Effective length of query: 540
Effective length of database: 941
Effective search space: 508140
Effective search space used: 508140
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no449_p11.g1 MSMg01no449_p11.g1 CHROMAT_FILE:
MSMg01no449_p11.g1 PHD_FILE: MSMg01no449_p11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:43 2005
(512 letters)
>mm_chr2_61535028_61535939
Length = 912
Score = 936 bits (484), Expect = 0.0
Identities = 504/512 (98%), Gaps = 3/512 (0%)
Strand = Plus / Minus
Query: 1 acatcctgatacataagcacaaggcacattagaactgatgggaatcttttgaagtctcaa 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 902 acatcctgatacataagcacaaggcacattagaactgatgggagtcttttgaagtctcaa 843
Query: 61 agcccattcataatgacacacctcatctaacaaggccacacctcctaatccttcctaaaa 120
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 842 agcccattc---atgacacacctcatctaacaaggccacacctcctaatccttcctaaaa 786
Query: 121 agttccaccaactagggtccaagcattcatatatataaacttatggggaatcattctcat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 agttccaccaactagggtccaagcattcatatatataaacttatggggaatcattctcat 726
Query: 181 tcaaactatcacaaaggagaaaaaagtgttttcttatgtttgaaattcacaacataggca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 tcaaactatcacaaaggagaaaaaagtgttttcttatgtttgaaattcacaacataggca 666
Query: 241 tatgtatctttatgaagtcatgtaggaagcttttagcataacgctgacctctatagataa 300
|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 tatgtaactaaatgaagtcatgtaggaagcttttagcataacgctgacctctatagataa 606
Query: 301 atgccaacttttatcatttactaaatataggtcctgatgggctcatttgtagagagaagt 360
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 atgccaacttttatcatctactaaatataggtcctgatgggctcatttgtagagagaagt 546
Query: 361 taatatttgcccacagaaatgacaaaatccactaatggtaacttttaaaataagtgccga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 taatatttgcccacagaaatgacaaaatccactaatggtaacttttaaaataagtgccga 486
Query: 421 aagttcactgaaaaggtttgaaagtactaactctgagatcacaaaaaaaattgacaaagc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 aagttcactgaaaaggtttgaaagtactaactctgagatcacaaaaaaaattgacaaagc 426
Query: 481 acttaatgaagggaagatcacttattcttaca 512
||||||||||||||||||||||||||||||||
Sbjct: 425 acttaatgaagggaagatcacttattcttaca 394
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space: 452804
Effective search space used: 452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
