BAC Information

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BAC

Clone NameMSMg01-450B12
Chromosome2 (Build37)
Map Location 143,167,555 - 143,299,691
singlet/doubletdoublet
Overlap geneLOC668915
Upstream geneLOC668913, LOC668914, Kif16b, Snrpb2, Otor
Downstream geneLOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1, 4930517K23Rik, LOC627160, EG433481, Snx5, 8430406I07Rik, Ovol2, Ppia-ps2_1789.1, LOC635097, Csrp2bp, LOC100043552, 6330439K17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-450B12.T7 (MSMg01no450_b12.b1)MSMg01-450B12.TJ (MSMg01no450_b12.g1)
ACCAG537907AG537908
length766749
length of high quality
(start - end)
128 (175 - 302)245 (74 - 318)
definitionCHROMAT_FILE: MSMg01no450_b12.b1 PHD_FILE: MSMg01no450_b12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:53 2005CHROMAT_FILE: MSMg01no450_b12.g1 PHD_FILE: MSMg01no450_b12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:53 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,299,567 - 143,299,691)(143,167,555 - 143,167,799)
sequence
NATCAATAATTGCGGCGNNAAANGATCACATTCGTACCTGTGCGNGGAAN
CAGAGTTACTGAACCCTGCGNGCAGCNNGCAGGGAGGGCNNCGGNGNNGA
AGCNGNGGTTTCCCCCCNNCCNNGGAGACAGGNNCNCACCAGGNCNCCAG
GCGGGCCTTGGNGGGGGGGNNCNCCGCAACCATCTCCTAAGTTGAATGAC
AGGAGCTCTGATTTTCTTTAAAAACAGTACTGCCTTCAGTCTTTTTTCCA
TGAAAAGCCTCTTACGTTAGTTTCTAGCTTGTAATGGCAACAGGAGAAAC
GACGAGGTTTTTTTTTTTGAANCCCCNACCCCCAACACNNNCCCGAANCC
TTTTTTCTTCTTTTGGTTTTGGTAGACTTTTTTTTTTCATTCGGAGCAGT
ATTCCCCCCCCTATTCACTTATATTACAAATTTCCCCCAAGTATGCACCA
CTGAGTTTTATTAATAAAGAAGCCTTTCTACATGCCTATTTCATTAGTTT
TACATGATACTCACAGAGCTTGCATAATTTCTTGAACCACGCCATCTGCA
CTTGCTAGTTTGGCCCACCCTCACTATTGTCTTTTCCTACCGCGCCTCAT
TTTGGCCTTCGGCAATATCCCGCAACACGTTCCTGTTGTTACCCTTTTTT
TTTTTCTTCCTTCCCCCCCTTCGTCTTTCCTATTTACCTTTCCCTTCCGT
CTTTTTCCTTTGGTCTCCACACTCCAACACTTAATTTCATTTCTCCCTAT
TTCGCCATCACCTTTG
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCCTGTTTTGATGTTAAAGTGATATAG
CAAAGCACACCTATTATTTACTTATTCTTTGGCCCTGGTGTGCACCTACT
ACTTCTACCAAGACAGCCCCTGAAAGTACTGAGTTGAAATAAGTTCTGGC
TTATAGCTTTGGTATTCTTTAACTTATAATGCTGAAAGATTGCCTGCTGT
ATTAAGAGTTGACAGGTGAAGGCTTTTGCTATCCATGGTCTCATTACCGT
TTAGACATGTGTCAATTTATTCTCTCCCAGTAGTTGATCACACAATCTTG
AGTCAAATATAGTATTTCACAGGTGCTCACCCAAGTCTAAAAACAGCTCC
ACCCACTGGAGAAAGCTGATGGAGACTTAATTCTGACAAACAGATTTTTC
TTTCTACCTCAGGAATTCACTAGAGTGAATAAACCAGATTGACTCATTTA
ACTTGGTAAAAATCATTTGAAAGCATGCTAAAATGGAAGTGGTGGAGGTA
TGAAAGAATACCACCTGGTCTATTGAATTACCTAGTGTTGCAGTCTCATT
AATTCAGTGATGTTTCCAATGGTGCATGCTCTGTATATATATATCCCCAA
CCTCTTTGATGTTTCCGCACCATTCTAGATTTGCTTGCAATCTCTTCATG
TTCTTTTGCCTCTTGTCTTTTGTTGCTTTGTCTTCCATGCTTTGTCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no450_b12.b1 MSMg01no450_b12.b1 CHROMAT_FILE:
MSMg01no450_b12.b1 PHD_FILE: MSMg01no450_b12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:53 2005
         (128 letters)



>mm_chr2_143299367_143299894
          Length = 528

 Score =  219 bits (113), Expect = 6e-62
 Identities = 122/125 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   cgcaaccatctcctaagttgaatgacaggagctctgattttctttaaaaacagtactgcc 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cgcaaccatctcctaagttggatgacaggagctctgattttctttaaaaacagtactgcc 266

                                                                       
Query: 61  ttcagtcttttttccatgaaaagcctcttacgttagtttctagcttgtaatggcaacagg 120
           ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttcagtcttgtctccatgaaaagcctcttacgttagtttctagcttgtaatggcaacagg 206

                
Query: 121 agaaa 125
           |||||
Sbjct: 205 agaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 128
Length of database: 528
Length adjustment: 8
Effective length of query: 120
Effective length of database: 520
Effective search space:    62400
Effective search space used:    62400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no450_b12.g1 MSMg01no450_b12.g1 CHROMAT_FILE:
MSMg01no450_b12.g1 PHD_FILE: MSMg01no450_b12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:53 2005
         (245 letters)



>mm_chr2_143167355_143167999
          Length = 645

 Score =  466 bits (241), Expect = e-136
 Identities = 244/245 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcctgttttgatgttaaagtgatatagcaaagcacacctattatttacttattctttggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcctgttttgatgttaaagtgatatagcaaagcacacctattatttacttattctttggc 260

                                                                       
Query: 61  cctggtgtgcacctactacttctaccaagacagcccctgaaagtactgagttgaaataag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctggtgtgcacctactacttctaccaagacagcccctgaaagtactgagttgaaataag 320

                                                                       
Query: 121 ttctggcttatagctttggtattctttaacttataatgctgaaagattgcctgctgtatt 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 ttctggcttatagctttggtattctttaacttataatgctgaaagattgcctgctggatt 380

                                                                       
Query: 181 aagagttgacaggtgaaggcttttgctatccatggtctcattaccgtttagacatgtgtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagagttgacaggtgaaggcttttgctatccatggtctcattaccgtttagacatgtgtc 440

                
Query: 241 aattt 245
           |||||
Sbjct: 441 aattt 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)