BAC Information

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BAC

Clone NameMSMg01-450F03
Chromosome2 (Build37)
Map Location 18,491,573 - 18,491,954
singlet/doubletsinglet
Overlap genenone
Upstream geneNebl, LOC100041319, LOC100041047, 1700113O17Rik, A930004D18Rik, 2810030E01Rik, Mllt10, LOC641254, Dnajc1, LOC100041388, LOC623325
Downstream geneLOC625815, Commd3, Bmi1, EG667477, LOC100041448, BC061194, LOC667493, LOC100041479, Pip5k2a, 4930426L09Rik, LOC667521, Armc3, Msrb2, LOC100041196, Ptf1a, LOC100041534, 4921504E06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-450F03.T7 (MSMg01no450_f03.b1)MSMg01-450F03.TJ (MSMg01no450_f03.g1)
ACCAG538078AG538079
length742787
length of high quality
(start - end)
196 (132 - 327)383 (79 - 461)
definitionCHROMAT_FILE: MSMg01no450_f03.b1 PHD_FILE: MSMg01no450_f03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:12 2005CHROMAT_FILE: MSMg01no450_f03.g1 PHD_FILE: MSMg01no450_f03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGGCGCGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGGTATCGA
GGCGCGGAANTCAAGGCCTTCTAATAAACATAATAAAGGCAATATACAGC
AAACCAGTAGCCAACATCAAACTATTTGCACAGAAACTTGAAGCAATCCC
ATTGAAATCAGGGACTAGACAAGGCTGCCCACTCTCTCACTCCCTATTCA
ATATAGTACTTGAAGTCCTAGCCAGAGCAATTAGACAATAAAAGGAGAGC
AAAGGGATATTTATTGGAAAGGAAGAAGTCAAAATATCACTCTTTGAAGA
TGATACGGTAGTATATATAAGTGATTCATAATTTCCACCAGAGAACTCCT
AAATCTGATAAACAACTTCAGTGAAGTAGCTGGATGTAAAATTAACTCAA
ACAAATTAGTGGCGTTTCTCCACACAAAGGATTAACAGGCTGAGAGAGAA
ATTAGGGAAATGACACCATTCACAATAGTCACAAACAATACAAAGTATCT
TGGTGTGACTCTAACCAAACAAGCGAAAGATTTGTATGAGAACAGCTTCA
AGTCTCTGAAGAAAGAAGTTGAAGAAGACCTCAGAAGATGGAAAGATCTC
CCAAGCTCATGGATTGGTAGGATTAACATAGCAAAATTGATTTTCTTGCT
AAAAGCAATCTTCCGTATTCTCGCAATCCTCAACCAAAATTCTAATTCCA
TTTCTTCCCATAGTTTATCAAGCGAAATTTTGCCACATTACC
NTCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATTGGCTGGGAAGTCCTGCCTG
AGGAGGTGTGGGCTTGCGCCAGGCCTTTGGAAGTCAAGGGCCCTCTCTCA
AACAGCCTCTTGGTTCTGGGCTGGGAGGTGAGCTGGAGCTGTTGGCCTGA
GGCTTTTCTTCTCTTTCAGGGTGGCCTCCCCATGTGACTTCCTGGCTTAT
TAGTATCAGGGCAGCTGGGCTGGGAGAAGTGTTGGCGCTAGGTTATTGGT
GGAAGCTCCTATGGCTAGCATTCATGATGAATCCTGTCTGCTGGGGGAGT
GAAGAGTCTCTGAGGCAAAGCTGGAAACTTCAAGGCTCTCAAGTTATAGC
CCCGCAAGTGTCAGGGCATTACTTGGGCTGTAGCCCAAGTACAGGTCAGA
GGCTGGCCAGAACAGGTCATGAGGCTACCCTACAGGTAAAGAAAGAGGAA
ATAACTCCCACCTCTTGACACTGGTATAGTGAATTATATTACAAGATTAT
AACAACGACTGCGAATAATGCTGTGGCCATCTTACAAACAATCTTGCATA
TATCTTAAGGAGATTGCTTCAGCAATGTTCCAAAAATGTGAACACGGCTG
TACTCTTTCTTACTTTTACCTTATTATTATGCCTCAATAACCGTCTGCCT
CCCTCTAGGGGGCAACCGCCCCCCCCCCCCATATTGTTACTTATTGGCCT
AATTCTTTCTATCTGGCCTCTCCAACCCTCTTCGCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no450_f03.g1 MSMg01no450_f03.g1 CHROMAT_FILE:
MSMg01no450_f03.g1 PHD_FILE: MSMg01no450_f03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:12 2005
         (383 letters)



>mm_chr2_18491373_18492155
          Length = 783

 Score =  659 bits (341), Expect = 0.0
 Identities = 370/383 (96%), Gaps = 8/383 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   attggctgggaagtcctgcctgaggaggtgtgggcttgcgccaggcctttggaagtcaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attggctgggaagtcctgcctgaggaggtgtgggcttgcgccaggcctttggaagtcaag 260

                                                                       
Query: 61  ggccctctctcaaacagcctcttggttctgggctgggaggtgagctggagctgttggcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggccctctctcaaacagcctcttggttctgggctgggaggtgagctggagctgttggcct 320

                                                                       
Query: 121 gaggcttttcttctctttcagggtggcctccccatgtgacttcctggcttattagtatca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaggcttttcttctctttcagggtggcctccccatgtgacttcctggcttattagtatca 380

                                                                       
Query: 181 gggcagctgggctgggagaagtgttggcgctaggttattggtggaagctcctatggctag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggcagctgggctgggagaagtgttggcgctaggttattggtggaagctcctatggctag 440

                                                                       
Query: 241 cattcatgatgaatcctgtctgctgggggagtgaagagtctctgaggcaaagctggaaac 300
           |||||| |||||||| |||||||| |||||||||||| ||||||||||||||||||||||
Sbjct: 441 cattcaggatgaatcatgtctgctcggggagtgaagaatctctgaggcaaagctggaaac 500

                                                                       
Query: 301 ttcaaggctctcaagttatagccccgcaagtgtcagggcattacttgggctgtagc---- 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
Sbjct: 501 ttcaaggctctcaagttatagccccgcaagtgtcagggcattacttgggctgtagctatt 560

                                  
Query: 357 --ccaagtacaggtca-gaggct 376
             ||| | |||||||| ||||||
Sbjct: 561 ggcca-gaacaggtcatgaggct 582


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 383
Length of database: 783
Length adjustment: 9
Effective length of query: 374
Effective length of database: 774
Effective search space:   289476
Effective search space used:   289476
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)