BAC Information

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BAC

Clone NameMSMg01-450G10
Chromosome2 (Build37)
Map Location 177,542,127 - 177,542,540
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039123, LOC626877, LOC100039156, LOC100039166, 6230416C02Rik, LOC635470, LOC100043403, LOC100039198, LOC100043406, LOC668066, LOC621442, LOC628308, OTTMUSG00000016571, LOC100039233, LOC626802
Downstream geneLOC329575, LOC433515, LOC665205, OTTMUSG00000016327, LOC100039263, LOC626848, 2810021G02Rik, Phactr3, Sycp2, Ppp1r3d, 9030418K01Rik, Cdh26
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-450G10.T7 (MSMg01no450_g10.b1)MSMg01-450G10.TJ (MSMg01no450_g10.g1)
ACCAG538140AG538141
length745755
length of high quality
(start - end)
245 (327 - 571)413 (77 - 489)
definitionCHROMAT_FILE: MSMg01no450_g10.b1 PHD_FILE: MSMg01no450_g10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:18 2005CHROMAT_FILE: MSMg01no450_g10.g1 PHD_FILE: MSMg01no450_g10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:19 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
GCTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAAGAGCATCCGC
GGAATTCAATTCTTCCCACCACATGGTGGCTCCCAACCATCTGTAATGGG
ATCCAATGCTCTCTTTTCCTGCGTCCAAAGACCACTATCGTGTACTCATT
TACATAAAATAATTAAATAAAAATTTTCAAAATGACAAAAAAAAAAAGAA
CTGAATGATCTGAGCAGTCCACTAACCCACATTCAATAGAATAAACGAGA
ATACTATACACAAAAGATTCAATACAAGGACCAGTTTTGAGGACAGCTGC
AGAAAGAAGATAGTGGTGTTTTTTTGAAAGAAGCTATGTAGGGGCTGGAG
AGATGGCTCAGCAGTTAAGAACACTGACTCTTCTTTTGAAGATCTTGAGT
TCAAATCTCAACAACCACATGGTAGCTTAGAACCTTCTATAATGACATCT
GACATCCTCTCCTGGGGTGTCTGAAGACAGTTACAGTGTACTTACATATA
AGTAATAAATAAATCTTTTTTATTTATATTTTTTAGAAAGGAAGCTATGT
ATGCAGGAGGTGACACAGCTAGAGGAGTGGGAATACCTAAGAACTTACAG
TCAGGGTCATTTTATCATAATCTTAAATTGCTGAACAAGAAGCTATAAGT
TTTGGTGTTTTCCCTGCAAAATTTTGGTCTCGCTTGGCCCGTTCATTCTT
TCCCATCCTCTGACCTTTTTCCTGGAAGGCGTGTTCCCTACACAC
NACAATGAATAGTGGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGAGAGATATTCAGCTGTGAGTAA
AACCAGAGAAACTTTGGAGTCAAACTATAGGCTAAGATGAACCATAACTA
TTACAAAAGTGGAATTGCCTTGAATTGGTAATACAATTAACATCTGCAGT
TCCTCTTTCTCCACATCCTTGCCAGCACCTGCTGTCACCTGAATTTTTGA
TCTTAGCCATTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATT
TGAATTTCCCTGATGATTATTTTTGCTGAACATTTTTTCAGGTGCTTCTC
AACCATTCGGTATTCCTTAGGTGAGAATTCTTTGTTTAGCTCTGAGCCCC
ATTTTTTAATGGGGTTATTGGATTTTTCTGGAGTCCACCTTCTTGAGTTC
TTTATATATATACTGGATATTATTCCCCTCTCTGATTTAGGAAAGGTAAA
GATCCTTTCCCAATCTGTTGGTGGTCTTTTTGCCTTATTGACAGTGTTCT
TTTGTCTTGCACGAGTTTTGTCATTTCGTGAGCTCCTATTTGGCTATTAT
CGATCCTATAGCCCATGCCATTGCTTGTTTATTCCGGAAATCTTTCCCCT
GTAACCTTTACTTTTTAGCCCCCTTCTCCTATTTTCCCCTCCCAACACCT
CTTACTTGCTATCGCCCTCTATTCGCAGCTCCTTTTTCGCATACCATATT
TTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no450_g10.g1 MSMg01no450_g10.g1 CHROMAT_FILE:
MSMg01no450_g10.g1 PHD_FILE: MSMg01no450_g10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:19 2005
         (413 letters)



>mm_chr2_177541927_177542740
          Length = 814

 Score =  746 bits (386), Expect = 0.0
 Identities = 407/418 (97%), Gaps = 9/418 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   agagagatattcagctgtgagtaaaaccagagaaactttggagtcaaactataggctaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agagagatattcagctgtgagtaaaaccagagaaactttggagtcaaactataggctaag 260

                                                                       
Query: 61  atgaaccataactattacaaaagtggaattgccttg-aattggtaatacaattaacatct 119
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 atgaaccataactattacaaaagtggaattgccttgcaattggtaatacaattaacatct 320

                                                                       
Query: 120 gcagttcctctttctccacatccttgccagcacctgctgtcacctgaatttttgatctta 179
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 321 gcagttcctctttctccacatcctcgccagcacctgctgtcacctgaatttttgatctta 380

                                                                       
Query: 180 gccattctgactggtgtgaggtggaatctcagggttgttttgatttgaatttccctgatg 239
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 gccattctgactggtgtgaggtggaatctcagggttgttttgatttgcatttccctgatg 440

                                                                       
Query: 240 atta----tttttgctgaacattttttcaggtgcttctcaaccattcggtattccttagg 295
           ||||    |    |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attaaggat----gctgaacattttttcaggtgcttctcaaccattcggtattccttagg 496

                                                                       
Query: 296 tgagaattctttgtttagctctgagccccattttttaatggggttattggatttttctgg 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tgagaattctttgtttagctctgagccccattttttaatggggttattggatttttctgg 556

                                                                     
Query: 356 agtccaccttcttgagttctttatatatatactggatattattcccctctctgattta 413
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 agtccaccttcttgagttctttatatatatactggatattattcccctctctgattta 614


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 814
Length adjustment: 9
Effective length of query: 404
Effective length of database: 805
Effective search space:   325220
Effective search space used:   325220
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)