Query= MSMg01no450_m04.b1 MSMg01no450_m04.b1 CHROMAT_FILE:
MSMg01no450_m04.b1 PHD_FILE: MSMg01no450_m04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:47 2005
(165 letters)
>mm_chr2_96415381_96415945
Length = 565
Score = 296 bits (153), Expect = 5e-85
Identities = 162/165 (98%)
Strand = Plus / Minus
Query: 1 ttagagcaatattcaaaaaacaaagtcagcctcttcatcccgtgtgtcttgttccttttg 60
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 365 ttagagcaatattcaaaaaacaaagtcagcctcagcatcccgtgtgtcttgttccttttg 306
Query: 61 tgtcaggcttatgggtagttttcttagatttttattttttaaatcatatttccttattta 120
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 305 tgtcaggcttatgggtagttttcttagatttttattttttaaatcatattttcttattta 246
Query: 121 tttgtaaggacagacgatgatgcctcttcaccaccgaatgcatcc 165
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tttgtaaggacagacgatgatgcctcttcaccaccgaatgcatcc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 165
Length of database: 565
Length adjustment: 8
Effective length of query: 157
Effective length of database: 557
Effective search space: 87449
Effective search space used: 87449
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no450_m04.g1 MSMg01no450_m04.g1 CHROMAT_FILE:
MSMg01no450_m04.g1 PHD_FILE: MSMg01no450_m04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:48 2005
(497 letters)
>mm_chr2_96181924_96182818
Length = 895
Score = 774 bits (400), Expect = 0.0
Identities = 457/500 (91%), Gaps = 40/500 (8%)
Strand = Plus / Plus
Query: 1 ttgaacaatttatcattttgttatttgatcacattgttcaattactgtctatggaccatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 ttgaacaatttatcattttgttatttgatcacattgttcaattactgtctatggaccatg 290
Query: 61 gagtctagttctcataggaaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 gagtctagttctcataggaaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaaca 350
Query: 121 aaacaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaaactctgctttctcttac 180
||||||||||||| |||||||||||||||||
Sbjct: 351 aaacaaaacaaaa------------------------------actctgctttctcttac 380
Query: 181 tcatcactgttccactgtcctaaaggtttgtgaggcattaggcaaatactctgcatcaat 240
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcatcactgttacactgtcctaaaggtttgtgaggcattaggcaaatactctgcatcaat 440
Query: 241 aaataaatttttc----taactaacaagtaaaactaccaaaattgaaaatgtgatttctg 296
||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaataaa-----caaactaactaacaagtaaaactaccaaaattgaaaatgtgatttctg 495
Query: 297 atttcaaattaatataaaagacaaatgaatgagcactggagaacaacctaccttcagttc 356
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 atttcaaattaatataaaacacaaatgaatgagcactggagaacaacctaccttcagttc 555
Query: 357 ctttcttttctgtgtctgtttgatttctatagtcagagggcaatgtggttctcttcttga 416
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 cttccttttctgtgtctgtttgatttctatagtcagagggcaatgtggttctcttcttga 615
Query: 417 actaattcattactctagtttgcattaataaaacaattgaagtagaattaagattctttc 476
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 acta-ttcattactctagtttgcattaataaaacaattgaagtagaattaagattctttc 674
Query: 477 tttgtctgatgggtttgttg 496
||||||||||||||||||||
Sbjct: 675 tttgtctgatgggtttgttg 694
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 52
Number of extensions: 19
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 895
Length adjustment: 10
Effective length of query: 487
Effective length of database: 885
Effective search space: 430995
Effective search space used: 430995
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
