Query= MSMg01no450_n02.b1 MSMg01no450_n02.b1 CHROMAT_FILE:
MSMg01no450_n02.b1 PHD_FILE: MSMg01no450_n02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:52 2005
(288 letters)
>mm_chr2_178548567_178549254
Length = 688
Score = 495 bits (256), Expect = e-144
Identities = 271/276 (98%)
Strand = Plus / Plus
Query: 12 gaattccattaatatactggagtgctgggtcggatctgaggccccggagctcccgatgga 71
|||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 gaattccattaagacaatggagtgctgggtcggatctgaggccccggagctcccgatggg 271
Query: 72 acctgcagaatctttaccactatgactttttctctgtcacttcctttgtgagcagagaag 131
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 acctgcggaatctttaccactatgactttttctctgtcacttcctttgtgagcagagaag 331
Query: 132 agttaatctgtcaacagctagaaattaaatcagttttaaaagctgagaaaagaggataga 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 agttaatctgtcaacagctagaaattaaatcagttttaaaagctgagaaaagaggataga 391
Query: 192 atttgtatatgcatgtgcatataagtgtaatatagatatgtttatctccatatacttact 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 atttgtatatgcatgtgcatataagtgtaatatagatatgtttatctccatatacttact 451
Query: 252 gggtgatagaggggaagaggaggggagggagagatg 287
||||||||||||||||||||||||||||||||||||
Sbjct: 452 gggtgatagaggggaagaggaggggagggagagatg 487
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space: 189441
Effective search space used: 189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no450_n02.g1 MSMg01no450_n02.g1 CHROMAT_FILE:
MSMg01no450_n02.g1 PHD_FILE: MSMg01no450_n02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:52 2005
(521 letters)
>mm_chr2_178716133_178717056
Length = 924
Score = 959 bits (496), Expect = 0.0
Identities = 516/524 (98%), Gaps = 3/524 (0%)
Strand = Plus / Minus
Query: 1 ttcccatggtcccttccagattcacagagctctgggcgctccaggcagagtagagagtgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 ttcccatggtcccttccagattcacagagctctgggcgctccaggcagagtagagagtgg 665
Query: 61 tttctctgcatcccagggctctcccacagacagcaaaagacctttttctgttggtgaaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 tttctctgcatcccagggctctcccacagacagcaaaagacctttttctgttggtgaaca 605
Query: 121 aggcatgagatgtgttctgtgcagtcagatctgggggtggggagttatgtctcaggtatt 180
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 aggtatgagatgtgttctgtgcagtcagatctgggggtggggagttatgtctcaggtatt 545
Query: 181 cactgagtaacagctctctacccccaggataagtacaggcagtgcagagaacacagctta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 cactgagtaacagctctctacccccaggataagtacaggcagtgcagagaacacagctta 485
Query: 241 gcaggggcctgtgaggagagagccatgggcctcacaggctatcactcagaattctccctt 300
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 484 gcaggggcctgtgaggagagagccatgggcctcacaggctatcactcagaatcctccctt 425
Query: 301 cagtacccaaacagatcttcccaccacagactctggacttacccacatggcacaaacctt 360
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 cagtacccaaacaggtcttcccaccacagactctggacttacccacatggcacaaacctt 365
Query: 361 gatg---gaagcaacagctcacagtgattttcagctcacaaagcctcttgggctccctgg 417
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 gatggaagaagtaacagctcacagtgattttcagctcacaaagcctcttgggctccctgg 305
Query: 418 catggtcttccaccaaattcctagggagtgtaatagggtttcttagatgagaacttgcaa 477
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 304 catggtcttccaccaaattcctagggggtgtaatagggtttcttagatgagaacttgcaa 245
Query: 478 ggttcagatttctcccagaacatcgcgtttggacaccaaattca 521
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 ggttcagatttctcccagaacatcgcgtttggacaccaaattca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 924
Length adjustment: 10
Effective length of query: 511
Effective length of database: 914
Effective search space: 467054
Effective search space used: 467054
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
