BAC Information

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BAC

Clone NameMSMg01-450N18
Chromosome2 (Build37)
Map Location 154,357,716 - 154,357,958
singlet/doubletsinglet
Overlap geneCbfa2t2
Upstream geneCommd7, 7530422B04Rik, Dnmt3b, LOC668932, Mapre1, EG329541, LOC100043869, Spag4l, Bpil1, Bpil3, Rya3, LOC100043870, Gm1006, EG545477, Psp, LOC100043652, 1700058C13Rik, Plunc, 2310021H06Rik, U46068, BC018465, 5430413K10Rik, OTTMUSG00000015915, Cdk5rap1, Snta1
Downstream geneApba2bp, 1700003F12Rik, E2f1, Pxmp4, Zfp341, Chmp4b, LOC668936, LOC435692, Raly, Eif2s2, a, Ahcy, Itch, LOC100043877, LOC668931, Dynlrb1, Map1lc3a, Cdc91l1, Trp53inp2, Ncoa6, LOC668938, Ggtl3, Acss2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-450N18.T7 (MSMg01no450_n18.b1)MSMg01-450N18.TJ (MSMg01no450_n18.g1)
ACCAG538485AG538486
length780823
length of high quality
(start - end)
245 (71 - 315)81 (72 - 152)
definitionCHROMAT_FILE: MSMg01no450_n18.b1 PHD_FILE: MSMg01no450_n18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:55 2005CHROMAT_FILE: MSMg01no450_n18.g1 PHD_FILE: MSMg01no450_n18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXCTATTTCAATAAATCCGCGGAATT
CNATATATTCCAGATAAAGCTTAATGCACGTTCCCTGCAGTTCCAGCTCC
TCTAGAGGCAGCTTTATCAACTTAGTCTCAAAATAAAAACAACAAAAGGC
TGGGATCACACTTGCCAAATACACCCAAGGCTCTAAATGTAATCATCTGT
ACTGTGACCAGGGAGGGTGGCAGGATGTAACTGGTACTGTCACATTGTTT
CTGCCCTTACATCCTTTTTTCATCTTTATGACCTACCTGCCTTCTCCTAC
GTGTACCAGGCACTTATTAACTCTAAATTCTGTCTTAATCTCCTAAGTGG
TATAATTATCATATCTGGTCTAATTTTTCGTATTTGTTTTTATTCTATCA
AAGCATCCTGGGCCCTGGGTAAGGTATTGGGAGTCTACCTTATCTGCCTG
CCCAGTTTGTAATTTAGAACCAACATTTACCTAATGAGATTACTGTGAGG
ACCAGAAGAAGCATGCATGCACAGCCAGGTGTCCATCCACCTGCACACAG
TGAGCCTACTACATCTCTATAGCTGGGTATCTTCATCTGTATGTACTGAA
TCTGCTCCTAGACTGCTAGTCTTTATCATCCCATGGGACACCCTTCACTT
TTTGTTATTTACAAAAACGTGCGTGCGGGCTGCAACAACTTTATGAAACT
AAAATAATACCCCATCCATCTATTCCCTACCTTCACAAATACAAAAAATT
TTTCTTTATATCGTTTAAAACCTCCCCCCC
CGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTGATTTGACTTAAATAGTTTTAGAAAGT
TTGGGTAGTTGATAGAAGGTTTAAAGAGATGGTTTAAGTTGTTTTGCCAG
AAAGATACCACCAAGTTAGAGTCACGAACAGAACGTGCCCGCCCGTCACT
GTAGAATACAGAGGGCTGCGCAGGGTAGAAAAGGAGCCAAGTGAGCTTTC
CTGGGTTACTAGCACGGAACTGTACACTGAACAGGAACATAGGCTTGGCA
CAAAAAATGACCACACTTTTTTCTTTCTAGGTAGCCTCTGAGCTCCTGCA
CCTTGTTATCTATCCATGTGCCCACCGGTCTTGCTGCCTCCCTTGCAGCG
ACATCTTCCCCCCCCCCTCGCTGCATCCTCCTATTCCTCTATTCTTCTTT
CCTCCTTCTGCTCTCTACCCCCTCCTCCCCCTTTCCCTTACTGCTCCCCC
CCACTCCCTCTGTCTTCTTTTCCCCCCCCCTCTTCCTCCCCTTCTTCCCA
TTATCTTCTCTCGCTTCCTATTTTCTCCTTCCCCTCTCCCTCCTCCTTCC
CTCTTCTCCCTTCCCCTCTTTCTTTACCCCTCCCTCCTTCGTTTCCTCTC
CTCCCCTCTCTCTCTTCTCTCCCTCCCTCTTCCTTTTTCTCCCCCCTCCT
CCTTTCTCCCTCTCCCTCCTCCCCCCCCTTTCTATCACTCCTCTTCTGCT
ATTCCGCTCTTCCCCCTTCCCGTCCCCTCTCCCTCCTCCCTTCTTTGTTC
CCCCTCTTCTCCTTCCCCCTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no450_n18.b1 MSMg01no450_n18.b1 CHROMAT_FILE:
MSMg01no450_n18.b1 PHD_FILE: MSMg01no450_n18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:55 2005
         (245 letters)



>mm_chr2_154357516_154358160
          Length = 645

 Score =  462 bits (239), Expect = e-135
 Identities = 242/243 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttaatgcacgttccctgcagttccagctcctctagaggcagctttatcaacttagtctca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ttaatgcacgttccctgcagttccagctcctctagaggcagctttatcaacttagtctca 384

                                                                       
Query: 61  aaataaaaacaacaaaaggctgggatcacacttgccaaatacacccaaggctctaaatgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 383 aaataaaaacaacaaaaggctgggatcacacttgccaaatacacccaaggccctaaatgt 324

                                                                       
Query: 121 aatcatctgtactgtgaccagggagggtggcaggatgtaactggtactgtcacattgttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aatcatctgtactgtgaccagggagggtggcaggatgtaactggtactgtcacattgttt 264

                                                                       
Query: 181 ctgcccttacatccttttttcatctttatgacctacctgccttctcctacgtgtaccagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ctgcccttacatccttttttcatctttatgacctacctgccttctcctacgtgtaccagg 204

              
Query: 241 cac 243
           |||
Sbjct: 203 cac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)