BAC Information

Click to search

BAC

Clone NameMSMg01-450P02
Chromosome2 (Build37)
Map Location 135,822,531 - 135,823,131
singlet/doubletsinglet
Overlap genePlcb4
Upstream genePlcb1, LOC100043487, LOC100043786, LOC100043788
Downstream gene6330527O06Rik, Pak7, LOC668910, LOC100043492, BC034902, Ankrd5, Snap25, LOC668911, Mkks, 2210009G21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-450P02.T7 (MSMg01no450_p02.b1)MSMg01-450P02.TJ (MSMg01no450_p02.g1)
ACCAG538549AG538550
length825750
length of high quality
(start - end)
150 (43 - 192)605 (81 - 685)
definitionCHROMAT_FILE: MSMg01no450_p02.b1 PHD_FILE: MSMg01no450_p02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:21:02 2005CHROMAT_FILE: MSMg01no450_p02.g1 PHD_FILE: MSMg01no450_p02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:21:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTTCTAAAATTGCGGCGCTAAACGACTACTATTTCAAGAAATCCGCGGAA
TTCATCTCTTTCTCCCCATAGTTGTATCAGTTTTTGCTTCTTGTATTTTG
CAACTCTATTTTTAGGCTCATCTCTGTTGGGGATTGGTTCTTTCTGTTTG
TTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGCCAAAC
TTACAATATAAATCGCTTTCACTCTAACCTCATATCACCACAATACATTA
TTTCCATCACAAACTAAATATACACACCCACCCATTACCAAAGCCCACAC
ACTACCTTCACATTTTTTTTTCTCCCACCTATCCACTCTTTTCTCCCATA
CAACCTTTCCTCTATCGCCTTCCTTTCATCATTATCATTCTCTACACCTC
CTTTATATATTCCCCCATTTATTTTTACAATTACCACTAAAACCCCCCTT
TCTCACTTTACCCTCCTCACCTACATTTTTATATATTCATAAATCAATAT
ACATCACCCCATACATTCCCACATTCCAACACCCATAACCCCAAATCAAT
ACTCTAACCCCCACTTACACACCACCCCCCCTTTAACAAAATACATCTAA
TAATACCCCCCACCATATCTTCTTACATATATCATACCCCTCCCCTCCTT
TTTTATATCTTTCCTCTTTTTCTCCCCCTCCCTCTCTCTCATTTTTTTCC
CCCCCCTTCCTATCTCCACCTCCTCTCCCTTTCTTACTTACCTTTTTTCT
ATTCCCTTCCTACCTTTCCCTTGCCTCACCCCCTTACAACTCATTATCAA
ATCTCACCTTTATCTCCTTACCACT
NNNCCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCCATACACATCTTCCTCC
CAACTTTATATCTTACTTTTCATTTAAAAAAGCAAACAAACAAACAAACA
AACAAAAAACACTAAGTCCAGTTAGTGCAGTTTCTATGTGCATGGGTGTG
GAGCCTCTTTCTATATTTTTAAATCAGTGTCTTGTAAGTTTTCAGACTCT
GTACTACATAACAACTCTTCAGAGAGGGATACTAGGGATATATTGTCCCT
GGGACATTAGAAAATACCCATTTAATCTTATTTTTATTCTCAAGCATAAG
TGGTATGAAGGTGATACTTAGGACTGGTTGTTAAAGATGAGACAATGGCC
ATGGAGCCGTCCTCATGAGCAGGAGTTGAAGTCCTACAATGTGTAAAGCC
CTTTGTCACCCGAGGAACAGGGGACCCAGGAAGCCTGCCTGGAGGTTTCT
TTCTAGGTCCATGCTGCCGAATGCAGATCTGCCTCCCGACTCTGCAGAGA
GAATTTTCCCAGTACTTGAAAACAAGACCTAAAAAAAAACACATTGAAAG
TTTCTTCAAAGCCAGTTACCAGATGTTTTCATCTGCACAGCCAGCTCCAA
GGAGAACGTCCTCTTATTGCCTAGACTTTGTTACCTGGTTGCCGAAATTC
ATGTAAAGGGGGAGTTTGGNTATATGCCTTTGATCCTCTGCAGTGGACTG

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no450_p02.g1 MSMg01no450_p02.g1 CHROMAT_FILE:
MSMg01no450_p02.g1 PHD_FILE: MSMg01no450_p02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:02 2005
         (605 letters)



>mm_chr2_135822327_135823331
          Length = 1005

 Score = 1112 bits (575), Expect = 0.0
 Identities = 596/605 (98%), Gaps = 4/605 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccccatacacatcttcctcccaactttatatcttacttttcatttaaaaaagcaaacaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ccccatacacatcttcctcccaactttatatcttacttttcatttaaaaaagcaaacaaa 264

                                                                       
Query: 61  caaacaaacaaacaaaaaacactaagtccagttagtgcagtttctatgtgcatgggtgtg 120
           ||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caaacaaacaaa----aaacactaagtccagttagtgcagtttctatgtgcatgggtgtg 320

                                                                       
Query: 121 gagcctctttctatatttttaaatcagtgtcttgtaagttttcagactctgtactacata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagcctctttctatatttttaaatcagtgtcttgtaagttttcagactctgtactacata 380

                                                                       
Query: 181 acaactcttcagagagggatactagggatatattgtccctgggacattagaaaataccca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acaactcttcagagagggatactagggatatattgtccctgggacattagaaaataccca 440

                                                                       
Query: 241 tttaatcttatttttattctcaagcataagtggtatgaaggtgatacttaggactggttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttaatcttatttttattctcaagcataagtggtatgaaggtgatacttaggactggttg 500

                                                                       
Query: 301 ttaaagatgagacaatggccatggagccgtcctcatgagcaggagttgaagtcctacaat 360
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttaaagatgagacaatgaccatggagccgtcctcatgagcaggagttgaagtcctacaat 560

                                                                       
Query: 361 gtgtaaagccctttgtcacccgaggaacaggggacccaggaagcctgcctggaggtttct 420
           ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct: 561 gtgtaaagccctttgtcacgcgaggaacaggggacccaggaagcctgcctgggggtttct 620

                                                                       
Query: 421 ttctaggtccatgctgccgaatgcagatctgcctcccgactctgcagagagaattttccc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttctaggtccatgctgccgaatgcagatctgcctcccgactctgcagagagaattttccc 680

                                                                       
Query: 481 agtacttgaaaacaagacctaaaaaaaaacacattgaaagtttcttcaaagccagttacc 540
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 681 agtacttgaaaacaagacctaaaaaaaaacacattgaaagtttcttcgaagccagttacc 740

                                                                       
Query: 541 agatgttttcatctgcacagccagctccaaggagaacgtcctcttattgcctagactttg 600
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agatgttctcatctgcacagccagctccaaggagaacgtcctcttattgcctagactttg 800

                
Query: 601 ttacc 605
           |||||
Sbjct: 801 ttacc 805


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space:   592025
Effective search space used:   592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)