Query= MSMg01no451_e05.b1 MSMg01no451_e05.b1 CHROMAT_FILE:
MSMg01no451_e05.b1 PHD_FILE: MSMg01no451_e05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:27 2005
(259 letters)
>mm_chr2_43475512_43476170
Length = 659
Score = 431 bits (223), Expect = e-125
Identities = 244/251 (97%)
Strand = Plus / Plus
Query: 6 aattctcatttgtcattcaacattgggcttttcagaggcctctatttctttagacacttg 65
||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 206 aattctcatttgtaattcaacattgggcttttcagaggcctctatttctttagccacttg 265
Query: 66 ctttaagccatggtcagccatggtaaatgacattttgagggtggacagggagtttttctc 125
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 266 ctttaagccatggtcagccatggtcaatgacattttgagggtggacagggagtttttctc 325
Query: 126 catgttgctttgagctgtttgcagacagagccccaaaggccacacaaagtatcgcttctc 185
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 326 catgttgctttgagctgtttgcagacagagccccgaaggccacacaaagtatcgcttctc 385
Query: 186 tgaaccctggggggggggggtgaattgtttaataatggtttgttttatttattcttcaca 245
|| |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tgtaccctgggcgggggggatgaattgtttaataatggtttgttttatttattcttcaca 445
Query: 246 caattacttca 256
|||||||||||
Sbjct: 446 caattacttca 456
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 259
Length of database: 659
Length adjustment: 9
Effective length of query: 250
Effective length of database: 650
Effective search space: 162500
Effective search space used: 162500
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no451_e05.g1 MSMg01no451_e05.g1 CHROMAT_FILE:
MSMg01no451_e05.g1 PHD_FILE: MSMg01no451_e05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:27 2005
(584 letters)
>mm_chr2_43633036_43634019
Length = 984
Score = 944 bits (488), Expect = 0.0
Identities = 553/584 (94%), Gaps = 16/584 (2%)
Strand = Plus / Minus
Query: 1 agtcaggaagctgaagcaggagcgtgatgagttttgggtcagcctgggcaatataacaag 60
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 701 agtcaggaaactgaagcaggagcgtgatgagttctgggtcagcctgggcaatataacaag 642
Query: 61 accctgtctcagaaagaaaagaaagtctgctctgctatcttatttctacagtgtcctata 120
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct: 641 accctgtctcagaaagaaaagaacgtctgctctgctatcttatttctacagtgtcctaaa 582
Query: 121 aaagtaaaaaccaccatgggaaagaaacccaaactgcaattgcttaaggagaaagaagag 180
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 aaagtaaaaaccaccacgggaaagaaacccaaactgcaattgcttaaggagaaagaagag 522
Query: 181 agtgaagaaagaaatgcttaaaccgaataggaggacaggtgggagtgaaatggatattca 240
|||| || ||||||||||||||| |||||| |||||||||||||||||| ||||||||||
Sbjct: 521 agtggagcaagaaatgcttaaacagaatagaaggacaggtgggagtgaagtggatattca 462
Query: 241 atacattgattagatgcagggatggttccatgctcatgttataaaatggatacctgtgca 300
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 acacattgattagatgcagggatggttccatgctcatgttataaaatggatacctgtgca 402
Query: 301 ctccaaataatactcaatctaatattgtaatactaataataatgtacttgattgtatttc 360
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct: 401 ctccaaataatactcaatctaatactgtaatactaataataatatacttgattgtatttc 342
Query: 361 aggcataactgcaaagttgtttataggaaagttgttcaaagaattccttaaccatgtttg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 aggcataactgcaaagttgtttataggaaagttgttcaaagaattccttaaccatgtttg 282
Query: 421 tttgtttgtttgtttgtttgattgattgattgattgattgattgattgattgaatgattc 480
|||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct: 281 tttgtttgtttgtttg----attgattgattgattgattgattgatt------------c 238
Query: 481 tttgtgaatttcacatcatgcacctcagtctggctcatctcccatcccctcatatcttcc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 tttgtgaatttcacatcatgcacctcagtctggctcatctcccatcccctcatatcttcc 178
Query: 541 cttagctcgtgcaacctccctccccctccaaataacacacacac 584
||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct: 177 cttagctagtgcaacctccctccccctccaaataacacatacac 134
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space: 559076
Effective search space used: 559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
