BAC Information

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BAC

Clone NameMSMg01-451G22
Chromosome2 (Build37)
Map Location 131,288,072 - 131,450,109
singlet/doubletdoublet
Overlap geneSmox, Adra1d
Upstream genePtpra, Mrps26, Oxt, Avp, 1700012O15Rik, Ubox5, Fastkd5, Prosapip1, 2600009E05Rik, Itpa, Slc4a11, 4930402H24Rik, LOC100043766, C030014O09Rik, LOC627316, Atrn, LOC100043768, Gfra4, Adam33, Siglec1, LOC100043457, Hspa12b, 1700037H04Rik, Spef1, Cenpb, Cdc25b, 2310035K24Rik, D430028G21Rik, Pank2, Rnf24, LOC100043463
Downstream geneLamr1-ps1, Prnp, Prnd, Rassf2, Slc23a2, LOC626513, LOC100043470, EG329521, 5730494N06Rik, Pcna, Cds2, Prokr2, 1700026D11Rik, Prei4, LOC100043781
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-451G22.T7 (MSMg01no451_g22.b1)MSMg01-451G22.TJ (MSMg01no451_g22.g1)
ACCAG538922AG538923
length771767
length of high quality
(start - end)		612 (70 - 681)181 (75 - 255)
definitionCHROMAT_FILE: MSMg01no451_g22.b1 PHD_FILE: MSMg01no451_g22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:21:40 2005CHROMAT_FILE: MSMg01no451_g22.g1 PHD_FILE: MSMg01no451_g22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:21:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(131,288,072 - 131,288,683)(131,449,932 - 131,450,109)
sequence
ACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAGATCCGCGG
AATTCTGCAGATGTCCTTGTTTCTATGCAATTTGATACTTAAGTCATCTT
ACTTAGAAAGTATCTTTCCTTTTAAATAACATTTGAGCATATTTATTTAT
TTACTTTACTTCTAGACAGGGTCTTACTATGTAGCTATTTTAGAACTTAC
TATGTAGGCCAGGCTGGCCTGGAATTAACAGAGCTCCACCTGCCTTTGCC
TCTCAAGTCCTGGAATCAAAGGTGAGTACCGCTGTGCCTGTTACAATATT
TGATGACTTAACTTTCATTCATTATCCTCTGTAGACCTTCATTGCCAGTC
AGTAGTCCACGGCATCAAGACCTCTCAGGAAAGTGTTGAGAAGATCATGG
TGTCCCAGACTTAATACTTAGGATACCTTTTCAGAGCTAGTACCTTAGAG
ATGCCTAGGTATCTAGTATAATGGATAAAGTGGTGGAGTGTTAGAAAGAT
TGTGAAATTATACCCTATCTGTGATTATTCATCCTCACTGTCAACTTGAC
TGGATTTTAGAATCACCAAAGAAGGGCTGGTGAGAAGGGTCAGTAGGGAA
AAGTGCTTGCTATACTAACATGACTATATGAGTTTAATTCATGGAACCCA
CTGAGGAAACATCCCTGGGTGTGTCTGTAAGGGTGTTTCTAGCTAGGTTT
AACTGAAGAAGGAAGACCTGGTTAAAACTTTCTCTGTTCATGATCTGTTA
CATAAAAGGAAAGTTATCTGG

ACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGTCTTGATTGATAACTATTAGAATT
TTTATTTAATACTGGTGGGTAGTAATAATGCTACAGAGATTTTAATACTA
TGTAATAAAATTTGAAACTCATGATTTCTTTAAACTCTTAACTTTATCAA
GTATCCCCTACTTATGTATTCTTTCATACCTTACTAGTATTTCAATACTA
TGGCTTGGGTTCCTTNNTAATCAAATTAAAAAAATGGGTTTTTTGGGGTT
TCCAAACCAGAAAAGGGAAAACCGGGGAAATTTACCCCCAATTTTTTTTA
AAAAGGGGCAAAAAAAAAAATTTTGTCCTCCCTCCCCCCCCCCCCCCTTT
TTTTTGTTGGGGGGAGAAAAANATTCCTAATTTTTTTTTTTTCCCCAAAA
ATTAAATTTTTTTTTATTTTTGGGGGGGGGGGGGGGGGGGTTTCCCCCCC
CCCCCCCCCCCCGCCGGGGAAAAAAAAAAAAAAAAATTTTTATTTTTAGG
AAATTAATAATTTATATTTTTTTTTTTTTTTGCGCGGCTTGCGGCGCGGC
GCGCATATTATAGAACAAAATCATCACCTCCGCCCCCCGGCGGAGCGGNG
TTTTTTTTTTTTTATTTTAAATTTAAATCCACCAAAGGGTTGCGGGGGGT
GCTGCGTACCTTTTGTTTCTCTCCTTCTTCCTCCCCCCTTTTATAACTAC
CCACAATTTAAAAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no451_g22.b1 MSMg01no451_g22.b1 CHROMAT_FILE:
MSMg01no451_g22.b1 PHD_FILE: MSMg01no451_g22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:40 2005
         (612 letters)



>mm_chr2_131287872_131288883
          Length = 1012

 Score = 1176 bits (608), Expect = 0.0
 Identities = 611/612 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttctatgcaatttgatacttaagtcatcttacttagaaagtatctttccttttaaataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttctatgcaatttgatacttaagtcatcttacttagaaagtatctttccttttaaataa 260

                                                                       
Query: 61  catttgagcatatttatttatttactttacttctagacagggtcttactatgtagctatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catttgagcatatttatttatttactttacttctagacagggtcttactatgtagctatt 320

                                                                       
Query: 121 ttagaacttactatgtaggccaggctggcctggaattaacagagctccacctgcctttgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttagaacttactatgtaggccaggctggcctggaattaacagagctccacctgcctttgc 380

                                                                       
Query: 181 ctctcaagtcctggaatcaaaggtgagtaccgctgtgcctgttacaatatttgatgactt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctctcaagtcctggaatcaaaggtgagtaccgctgtgcctgttacaatatttgatgactt 440

                                                                       
Query: 241 aactttcattcattatcctctgtagaccttcattgccagtcagtagtccacggcatcaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aactttcattcattatcctctgtagaccttcattgccagtcagtagtccacggcatcaag 500

                                                                       
Query: 301 acctctcaggaaagtgttgagaagatcatggtgtcccagacttaatacttaggatacctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acctctcaggaaagtgttgagaagatcatggtgtcccagacttaatacttaggatacctt 560

                                                                       
Query: 361 ttcagagctagtaccttagagatgcctaggtatctagtataatggataaagtggtggagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttcagagctagtaccttagagatgcctaggtatctagtataatggataaagtggtggagt 620

                                                                       
Query: 421 gttagaaagattgtgaaattataccctatctgtgattattcatcctcactgtcaacttga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gttagaaagattgtgaaattataccctatctgtgattattcatcctcactgtcaacttga 680

                                                                       
Query: 481 ctggattttagaatcaccaaagaagggctggtgagaagggtcagtagggaaaagtgcttg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctggattttagaatcaccaaagaagggctggtgagaagggtcagtagggaaaagtgcttg 740

                                                                       
Query: 541 ctatactaacatgactatatgagtttaattcatggaacccactgaggaaacatccctggg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctatactaacatgactatatgagtttaattcatggaacccactgaggaaacatccctggg 800

                       
Query: 601 tgtgtctgtaag 612
           ||||||| ||||
Sbjct: 801 tgtgtctataag 812


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space:   603204
Effective search space used:   603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no451_g22.g1 MSMg01no451_g22.g1 CHROMAT_FILE:
MSMg01no451_g22.g1 PHD_FILE: MSMg01no451_g22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:40 2005
         (181 letters)



>mm_chr2_131449732_131450312
          Length = 581

 Score =  344 bits (178), Expect = 2e-99
 Identities = 178/178 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtcttgattgataactattagaatttttatttaatactggtgggtagtaataatgctac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tgtcttgattgataactattagaatttttatttaatactggtgggtagtaataatgctac 319

                                                                       
Query: 61  agagattttaatactatgtaataaaatttgaaactcatgatttctttaaactcttaactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 agagattttaatactatgtaataaaatttgaaactcatgatttctttaaactcttaactt 259

                                                                     
Query: 121 tatcaagtatcccctacttatgtattctttcataccttactagtatttcaatactatg 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tatcaagtatcccctacttatgtattctttcataccttactagtatttcaatactatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 181
Length of database: 581
Length adjustment: 8
Effective length of query: 173
Effective length of database: 573
Effective search space:    99129
Effective search space used:    99129
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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