BAC Information

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BAC

Clone NameMSMg01-451J05
Chromosome2 (Build37)
Map Location 45,628,240 - 45,787,458
singlet/doubletdoublet
Overlap geneLOC666604
Upstream geneGtdc1, Zeb2, LOC100042661, LOC100041337
Downstream geneLOC383690
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-451J05.T7 (MSMg01no451_j05.b1)MSMg01-451J05.TJ (MSMg01no451_j05.g1)
ACCAG539032AG539033
length736745
length of high quality
(start - end)		586 (57 - 642)577 (82 - 658)
definitionCHROMAT_FILE: MSMg01no451_j05.b1 PHD_FILE: MSMg01no451_j05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:21:52 2005CHROMAT_FILE: MSMg01no451_j05.g1 PHD_FILE: MSMg01no451_j05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:21:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,628,240 - 45,628,821)(45,786,882 - 45,787,458)
sequence
NNNNNNNNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCCATCAGGCCACACAGCAAGGTCTGATAGAGCCAG
GGAGACTTTATGAAATCCAGACTGTCGACTAACATTTTATCAGCAAGACC
TCCATGTGAGTGTCGTGGACCTGGGAACAGCTTTCCCTACAATACTCATA
ACGCCAGTCAGAGCCCTACTCTTTTTCCATGTGATTTCTAGTTTGAAATG
CAAACAATTGCCAATTTGCTTGACTTGTATTTGTAATTATTTCCTTGTGA
ATGACTCATCAGTAAATGCTTTATAAATATTTTTCTATTTTTCCAATGTC
TATGGAATGATCATAGCATAGAAAATGTTGGCTTTCAAAGATTTATTAAT
ATCTCTTTTTGAAATAACAGGAATTTGCAAGATACAATAAAGACACTTTT
AAAAACAAATCTTGAATTTGAATTCTCTCCCAGACAATAGCTTATCTGAT
GTGGTTGATACAATTAACTACAGGGTAACTTTTTAGATCTATTGTACAAT
GTATAGAAAAGCAAGTGAATGTGTATTTTTGAATTTAGTTGAGAGCACCT
TGACATCAACTCCACATGATAGATCTTCAGATTTCACAATGTTTGTGCCC
ACCGAAGTCATAGCCTTATGTGCATTACAGAGTCTGGCTTCAGTTTTGCC
AGTAATGAAAGAAAACAGCCACTGATCATAATATGG

NNNNNNCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGGGAAATCCATGCCCTT
CATAAGAGAGACATGATTATTTGTTGTGTCATCACACCATTTAGCTCTCT
CCTTTCTTTAACTCATGTATGAAATCTTACCTCCCAGAGTTGAACAGTTG
ATTGGTGAATTAATCACGTCATAGTCTTAACAAAGAATGAAAGTCAGCTT
CATTTCTTACCATCATTGGCTTTATTTATTCCATTACTATGAGAATAAAA
ACATGCAGTTTGGTAAGAAAGATGGATCACAATTTGAGGTGAAGTCTCCT
TTACTAACCAAAGTCTCGTAGGGAGTGGCATGACTTTTAAGATGTGGGAC
CTGGTTGAGGAAGTAGTTCATGTGGGTATGCTATAGATGGGAATATTGGT
ACCCCATCCTTTCACATGTTGATTCCTGGCTCCATAAATTGATCAGCCTC
TACTATTATACATCCTTGATGCCTTGATACTTTACTTACAACAGTCTTAA
AGGCAATACTGCAGAGTAGAGAATGAGTTGACAGTTGGAAATGGTATGCT
AGGATGAATATTTTTATCATTTTCAATTGTTTTTCTGAAGCATGTTGAAC
CAATGTTAAGATTACAAAACCTTCACCTCCCACTTTAAGTTGATTTTTCC
ATTTTATTGAAAACTTAAACAATTCTAAATTTCTCTTTTCTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no451_j05.b1 MSMg01no451_j05.b1 CHROMAT_FILE:
MSMg01no451_j05.b1 PHD_FILE: MSMg01no451_j05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:52 2005
         (586 letters)



>mm_chr2_45628036_45629021
          Length = 986

 Score = 1110 bits (574), Expect = 0.0
 Identities = 580/582 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccatcaggccacacagcaaggtctgatagagccagggagactttatgaaatccag 64
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 205 gaattccatcaggccacacagcaaggtctgatagagccagggatactttatgaaatccag 264

                                                                       
Query: 65  actgtcgactaacattttatcagcaagacctccatgtgagtgtcgtggacctgggaacag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 actgtcgactaacattttatcagcaagacctccatgtgagtgtcgtggacctgggaacag 324

                                                                       
Query: 125 ctttccctacaatactcataacgccagtcagagccctactctttttccatgtgatttcta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctttccctacaatactcataacgccagtcagagccctactctttttccatgtgatttcta 384

                                                                       
Query: 185 gtttgaaatgcaaacaattgccaatttgcttgacttgtatttgtaattatttccttgtga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtttgaaatgcaaacaattgccaatttgcttgacttgtatttgtaattatttccttgtga 444

                                                                       
Query: 245 atgactcatcagtaaatgctttataaatatttttctatttttccaatgtctatggaatga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atgactcatcagtaaatgctttataaatatttttctatttttccaatgtctatggaatga 504

                                                                       
Query: 305 tcatagcatagaaaatgttggctttcaaagatttattaatatctctttttgaaataacag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tcatagcatagaaaatgttggctttcaaagatttattaatatctctttttgaaataacag 564

                                                                       
Query: 365 gaatttgcaagatacaataaagacacttttaaaaacaaatcttgaatttgaattctctcc 424
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 565 gaatttgcaagatacaataaaggcacttttaaaaacaaatcttgaatttgaattctctcc 624

                                                                       
Query: 425 cagacaatagcttatctgatgtggttgatacaattaactacagggtaactttttagatct 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cagacaatagcttatctgatgtggttgatacaattaactacagggtaactttttagatct 684

                                                                       
Query: 485 attgtacaatgtatagaaaagcaagtgaatgtgtatttttgaatttagttgagagcacct 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 attgtacaatgtatagaaaagcaagtgaatgtgtatttttgaatttagttgagagcacct 744

                                                     
Query: 545 tgacatcaactccacatgatagatcttcagatttcacaatgt 586
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tgacatcaactccacatgatagatcttcagatttcacaatgt 786


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 986
Length adjustment: 10
Effective length of query: 576
Effective length of database: 976
Effective search space:   562176
Effective search space used:   562176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no451_j05.g1 MSMg01no451_j05.g1 CHROMAT_FILE:
MSMg01no451_j05.g1 PHD_FILE: MSMg01no451_j05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:52 2005
         (577 letters)



>mm_chr2_45786682_45787658
          Length = 977

 Score = 1093 bits (565), Expect = 0.0
 Identities = 574/577 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgggaaatccatgcccttcataagagagacatgattatttgttgtgtcatcacaccatt 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 777 ctgggaaatccatgcccttcataagagagacatgattatttgttgcgtcatcacaccatt 718

                                                                       
Query: 61  tagctctctcctttctttaactcatgtatgaaatcttacctcccagagttgaacagttga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 tagctctctcctttctttaactcatgtatgaaatcttacctcccagagttgaacagttga 658

                                                                       
Query: 121 ttggtgaattaatcacgtcatagtcttaacaaagaatgaaagtcagcttcatttcttacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 ttggtgaattaatcacgtcatagtcttaacaaagaatgaaagtcagcttcatttcttacc 598

                                                                       
Query: 181 atcattggctttatttattccattactatgagaataaaaacatgcagtttggtaagaaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 atcattggctttatttattccattactatgagaataaaaacatgcagtttggtaagaaag 538

                                                                       
Query: 241 atggatcacaatttgaggtgaagtctcctttactaaccaaagtctcgtagggagtggcat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 atggatcacaatttgaggtgaagtctcctttactaaccaaagtctcgtagggagtggcat 478

                                                                       
Query: 301 gacttttaagatgtgggacctggttgaggaagtagttcatgtgggtatgctatagatggg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 gacttttaagatgtgggacctggttgaggaagtagttcatgtgggtatgctatagatggg 418

                                                                       
Query: 361 aatattggtaccccatcctttcacatgttgattcctggctccataaattgatcagcctct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 aatattggtaccccatcctttcacatgttgattcctggctccataaattgatcagcctct 358

                                                                       
Query: 421 actattatacatccttgatgccttgatactttacttacaacagtcttaaaggcaatactg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 actattatacatccttgatgccttgatactttacttacaacagtcttaaaggcaatactg 298

                                                                       
Query: 481 cagagtagagaatgagttgacagttggaaatggtatgctaggatgaatatttttatcatt 540
           ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 297 cagagcagagaatgagttgacagttggaaatggtatgccaggatgaatatttttatcatt 238

                                                
Query: 541 ttcaattgtttttctgaagcatgttgaaccaatgtta 577
           |||||||||||||||||||||||||||||||||||||
Sbjct: 237 ttcaattgtttttctgaagcatgttgaaccaatgtta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space:   548289
Effective search space used:   548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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