BAC Information

Click to search

BAC

Clone NameMSMg01-451K23
Chromosome2 (Build37)
Map Location 146,256,387 - 146,400,655
singlet/doubletdoublet
Overlap geneA230067G21Rik
Upstream geneSlc24a3, LOC627312, OTTMUSG00000015643, LOC433482, LOC100043810, Rin2, Nat5, Crnkl1, 4930529M08Rik, LOC100043563, Insm1
Downstream geneLOC668918, Gm114, Xrn2, Nkx2-4, Nkx2-2, LOC100043816, LOC668919, LOC668920, Pax1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-451K23.T7 (MSMg01no451_k23.b1)MSMg01-451K23.TJ (MSMg01no451_k23.g1)
ACCAG539116AG539117
length757767
length of high quality
(start - end)		684 (47 - 730)604 (75 - 678)
definitionCHROMAT_FILE: MSMg01no451_k23.b1 PHD_FILE: MSMg01no451_k23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:01 2005CHROMAT_FILE: MSMg01no451_k23.g1 PHD_FILE: MSMg01no451_k23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:01 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(146,400,221 - 146,400,655)(146,256,387 - 146,256,990)
sequence
NATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCATCAACTCTTCCAAGATCAGCAGTTCAAATTGTCCAGTCAACT
CCAAGCTCCAAGCCATCTTCTGAGGTTGAAAATGGAGGCAATCAAGCTTC
TAGCACACTAGCCCCAGGAAGAAAAAAAAAAAATCCTATCCAAACAGAAG
GAGACAAGGTCTCTACAGAAAGGTAGCTAAGATGAGATGAGGTCATACAA
ATAGACTTTAATCCAATACGACTAATGTTCTTATGAGCAAAGGAAACTGG
TTCAGAGTCACATAGGGAAGGACATACTAGGACACAGGGAAATGACAGTC
ACCTGCAAACCAAGGAGAGAGACCTCTGAGAAACAAAGAGGCCAGCACCT
TGATTTTGGACATCTAGTGTCCAGAACCAAGAGAAATACATTTCTGTCAT
TTAAGCCACTTGACTTTTAGTGATGTTATAGTGACTCAGCAAATTCACAT
GGGGACATGTAGCCGCTTTTGTTCCCACTGTTAACGCTCACTACCTATCA
CTTCCCCCTGAATCACTTGAGGCCACCATTGCTTGTGTGCTGCTGTGTGC
AGACCCCATAGCTCTGACTGTCTGGGTAGGACACTGAGAAGAACTCTGGT
TTTAGAGGCTGCTCAGATTGCCTTCCTTGTTCTGACCTTTATGGATGAAG
GTCATGAGACATTCTCCAAGGCTACCTAAGGCTGCTGGCCTCGGTGCATA
GCTGTAG

NACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATAGCTTTCTAAGAAAAGAAACAAAA
AAATACTCTTCACCCAGCTGTGGTGCCAGGAGCATCAGCCAGCTGAAAGC
ACTTCTCATGGCTGGTTCTGACTGCTGTGAGAGGGGACAGGGTTTACATC
ACACTGTGCACTGCTGTAATGCTTCCAAACTCAGCTACTGCACTTGATGG
AAATACTAATTTAAAAGACCGGGAAAGGTGACCTTCTAATTTACACTTTC
AAATTCCCATTTTGATACTTATTTGTAAACTTCTGCAAGGCACAATTCTT
CTGGTCCCACCCTTCTCTCCTCTTGGTGGTCTGTGGCCTCTGACAGCTCA
CTCTTGCCTTATTTTGGGGCTTCTCACCCACTGTGGACAGACAGACACCT
TGTACAACACCAATAGTGCTGGCTCTAGGACACCCATAAGACAGATGTGG
TCCTGGGAAAATTTCCAATACAGAAGGGTGTCACTGCCACGGGACCTCAG
TGCGAATTACAGGTGGCTAAGTGAGATGAACACACCCAGCGCAGACCAGA
GGCATTTCTAAGACTGGCTGCCAGTGAAAACATTGGGGATGAGGGAAGCA
TGGCTCANGGCTTGCTGCTCTGCCACTGAGAACACCGAGGGCAATGTGGA
CACTATGGGAGACAGGATGGAAGACATCTAACATTTTACCCTTGTACACG
CAATTTAATAGAAAACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no451_k23.b1 MSMg01no451_k23.b1 CHROMAT_FILE:
MSMg01no451_k23.b1 PHD_FILE: MSMg01no451_k23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:01 2005
         (684 letters)



>mm_chr2_146399572_146400655
          Length = 1084

 Score =  841 bits (435), Expect = 0.0
 Identities = 435/435 (100%)
 Strand = Plus / Minus

                                                                        
Query: 250  actggttcagagtcacatagggaaggacatactaggacacagggaaatgacagtcacctg 309
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1084 actggttcagagtcacatagggaaggacatactaggacacagggaaatgacagtcacctg 1025

                                                                        
Query: 310  caaaccaaggagagagacctctgagaaacaaagaggccagcaccttgattttggacatct 369
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1024 caaaccaaggagagagacctctgagaaacaaagaggccagcaccttgattttggacatct 965

                                                                        
Query: 370  agtgtccagaaccaagagaaatacatttctgtcatttaagccacttgacttttagtgatg 429
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 964  agtgtccagaaccaagagaaatacatttctgtcatttaagccacttgacttttagtgatg 905

                                                                        
Query: 430  ttatagtgactcagcaaattcacatggggacatgtagccgcttttgttcccactgttaac 489
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 904  ttatagtgactcagcaaattcacatggggacatgtagccgcttttgttcccactgttaac 845

                                                                        
Query: 490  gctcactacctatcacttccccctgaatcacttgaggccaccattgcttgtgtgctgctg 549
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844  gctcactacctatcacttccccctgaatcacttgaggccaccattgcttgtgtgctgctg 785

                                                                        
Query: 550  tgtgcagaccccatagctctgactgtctgggtaggacactgagaagaactctggttttag 609
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784  tgtgcagaccccatagctctgactgtctgggtaggacactgagaagaactctggttttag 725

                                                                        
Query: 610  aggctgctcagattgccttccttgttctgacctttatggatgaaggtcatgagacattct 669
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724  aggctgctcagattgccttccttgttctgacctttatggatgaaggtcatgagacattct 665

                           
Query: 670  ccaaggctacctaag 684
            |||||||||||||||
Sbjct: 664  ccaaggctacctaag 650


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1084
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1074
Effective search space:   723876
Effective search space used:   723876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no451_k23.g1 MSMg01no451_k23.g1 CHROMAT_FILE:
MSMg01no451_k23.g1 PHD_FILE: MSMg01no451_k23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:01 2005
         (604 letters)



>mm_chr2_146256187_146257190
          Length = 1004

 Score = 1162 bits (601), Expect = 0.0
 Identities = 603/604 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atagctttctaagaaaagaaacaaaaaaatactcttcacccagctgtggtgccaggagca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atagctttctaagaaaagaaacaaaaaaatactcttcacccagctgtggtgccaggagca 260

                                                                       
Query: 61  tcagccagctgaaagcacttctcatggctggttctgactgctgtgagaggggacagggtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcagccagctgaaagcacttctcatggctggttctgactgctgtgagaggggacagggtt 320

                                                                       
Query: 121 tacatcacactgtgcactgctgtaatgcttccaaactcagctactgcacttgatggaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacatcacactgtgcactgctgtaatgcttccaaactcagctactgcacttgatggaaat 380

                                                                       
Query: 181 actaatttaaaagaccgggaaaggtgaccttctaatttacactttcaaattcccattttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actaatttaaaagaccgggaaaggtgaccttctaatttacactttcaaattcccattttg 440

                                                                       
Query: 241 atacttatttgtaaacttctgcaaggcacaattcttctggtcccacccttctctcctctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atacttatttgtaaacttctgcaaggcacaattcttctggtcccacccttctctcctctt 500

                                                                       
Query: 301 ggtggtctgtggcctctgacagctcactcttgccttattttggggcttctcacccactgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggtggtctgtggcctctgacagctcactcttgccttattttggggcttctcacccactgt 560

                                                                       
Query: 361 ggacagacagacaccttgtacaacaccaatagtgctggctctaggacacccataagacag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggacagacagacaccttgtacaacaccaatagtgctggctctaggacacccataagacag 620

                                                                       
Query: 421 atgtggtcctgggaaaatttccaatacagaagggtgtcactgccacgggacctcagtgcg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atgtggtcctgggaaaatttccaatacagaagggtgtcactgccacgggacctcagtgcg 680

                                                                       
Query: 481 aattacaggtggctaagtgagatgaacacacccagcgcagaccagaggcatttctaagac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aattacaggtggctaagtgagatgaacacacccagcgcagaccagaggcatttctaagac 740

                                                                       
Query: 541 tggctgccagtgaaaacattggggatgagggaagcatggctcanggcttgctgctctgcc 600
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 741 tggctgccagtgaaaacattggggatgagggaagcatggctcagggcttgctgctctgcc 800

               
Query: 601 actg 604
           ||||
Sbjct: 801 actg 804


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space:   590436
Effective search space used:   590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |