BAC Information

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BAC

Clone NameMSMg01-451M11
Chromosome2 (Build37)
Map Location 159,273,825 - 159,274,189
singlet/doubletsinglet
Overlap genenone
Upstream geneB230339M05Rik, LOC628935, BC054059, LOC545481, Slc32a1, Actr5, Ppp1r16b, 2310007D09Rik, Dhx35, LOC100043891
Downstream geneLOC100043689, Gm826, Mafb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-451M11.T7 (MSMg01no451_m11.b1)MSMg01-451M11.TJ (MSMg01no451_m11.g1)
ACCAG539188AG539189
length748754
length of high quality
(start - end)		639 (47 - 685)663 (76 - 738)
definitionCHROMAT_FILE: MSMg01no451_m11.b1 PHD_FILE: MSMg01no451_m11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:09 2005CHROMAT_FILE: MSMg01no451_m11.g1 PHD_FILE: MSMg01no451_m11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTGCCTTTCTCACCTCGATATGTGTCAAAGTGAGCAGCATATTGA
ATAGATGCCTTCCTGAAACAAACCAGAGACCACAGAAGCAGCAGCAGGAA
TGACTGCATGGTTCCCTTCAGGGAACAGGGAATACAGGAAATAGGGCCCC
TGGTAAGCTCAAGCTAAAGCTTGAAGCCCCAGAGACCCTGAAGGGATGGT
AGGAGTTTCACCTGTTCCCAGAACCAGGCCCCTGCACATAGCCACAGGCC
CCTATAGAGAGAATTGTGGCCATCAGTCATGTAGGGGCAGTGCTCCCAAG
ACCTACCACATGTAGATGAGGCATCCCTAACATTTCAGACCAAGGAAGTA
TGAAGCAGCTACTGTCAGACCCCAACCGACCCAAAACTATATATAAGATC
CTATGCAGAAGGAATAAAAGTGTGTGAGAACTGCTCTGTTGTCTGAGAGC
ATCTGTCACAAGACCTGTAACACTGCCTGGGAAGAGAATGCTCTTCAGTA
CAACATCTCAGAGCATCAGCAGCAGAGGCAGCAACAGAGGCAATTTCTCC
TCCTGTTTGTACCCTTTTCTCTTCACTTGAACCGTCCCGCCTGGCCTGGC
CAGAGATCTCTGCGGATAGCCTCCGTACACAGACTGGCAAGGACCCACAG
CTCTGAAAGAGACCCTTCTACAAATGGACCTTGATGAGACCGTGATGA

TCACGATGCAGTGNGAGGCCTGGCGGCCGCCTGGTCAACAAAAGGGAGGT
GAACTATAGAATGCTCCAAAGAAGTCACTGAAGGGGGAAGAGCTTCCATC
AGAGTGAGTAGCACATTCCAGTGTGACCCAGATATAAGAAAATATTAGGA
AAAAGTGTTCCTTTTTGCCTGCCTGTCTTCTTCTCCTGCTGTTAAGAGCA
TAAACTTTTTGGCTTTTGTAGTTTATGCTGGTGGCATCCTTTGTTAAGTT
TGGAACCCAACTTATTCAGCCTTCTGTCATGGAGCAAAGTCCTACATCTC
TTCAAGGATCCTCTTTTTTTTCATCAGGAGTTTGGTATTGTTGAAGCATC
CAGAGTCACAGACTGAGAAACTATCAGATTTTCCAATTCTCCAGCATGCA
GATGGTGATTGTTGGACTAGTCAATCTTAAATAAGCCAATGCAATAAATC
TGTTTTCGATATATATTCATTCTAACAGTTATGTTACTCTAGAGAACCAT
GACTAATAAAGGAAGCCTGCTCTCATCAAGTGATAGTTTTGTTTTGTTTT
GTTTTGTTTTATTTTTAGGAAAGAACTACATGCCTGAAGAGATGGCTCAA
TGGTTAAAAGTGCTCGTACAAGCCTACCAACTCAAGTTCAAAACCTCAAA
ACCCATTTAAAAGTCCGACTCAGCACAGGCCTCTGTAATCACAGTGCACC
TGCATAAAATAGGAAACAGAAGCCAAAGAACCTACACGCTTTAGACAAGA
TGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no451_m11.b1 MSMg01no451_m11.b1 CHROMAT_FILE:
MSMg01no451_m11.b1 PHD_FILE: MSMg01no451_m11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:09 2005
         (639 letters)



>mm_chr2_159273825_159274863
          Length = 1039

 Score =  638 bits (330), Expect = 0.0
 Identities = 357/366 (97%), Gaps = 2/366 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctgcctttctcacctcgatatgtgtcaaagtgagcagcatattgaatagatgcc 63
           |||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggaattctgcctatctaaccccgatatgtgtcaaagtgagcagcatattgaatagatgcc 306

                                                                       
Query: 64  ttcctgaaacaaaccagagaccacagaagcagcagcaggaatgactgcatggttcccttc 123
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 305 ttcctgaaacaaaccagagaccacagaagcagcagcaagaatgactgcatggttcccttc 246

                                                                       
Query: 124 agggaacagggaatacaggaaatagggcccctggtaagctcaagctaaagcttgaagccc 183
           ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 245 agggaacagggcatacaggaaatagggcccctggtatgctcaagctaaagcttgaagccc 186

                                                                       
Query: 184 cagagaccctgaagggatggtaggagtttcacctgttcccagaaccaggcccctgcacat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 cagagaccctgaagggatggtaggagtttcacctgttcccagaaccaggcccctgcacat 126

                                                                       
Query: 244 agccacaggcccctatagagagaattgtggccatcagtcatgtaggggcagtgctcc-ca 302
           ||||||||||||||||||||||||||||||||||||||||| |||||||||||| || ||
Sbjct: 125 agccacaggcccctatagagagaattgtggccatcagtcatataggggcagtgc-ccaca 67

                                                                       
Query: 303 agacctaccacatgtagatgaggcatccctaacatttcagaccaaggaagtatgaagcag 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66  agacctaccacatgtagatgaggcatccctaacatttcagaccaaggaagtatgaagcag 7

                 
Query: 363 ctactg 368
           ||||||
Sbjct: 6   ctactg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space:   647241
Effective search space used:   647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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