BAC Information

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BAC

Clone NameMSMg01-451N02
Chromosome2 (Build37)
Map Location 151,426,982 - 151,427,653
singlet/doubletsinglet
Overlap geneSnph
Upstream gene2310001A20Rik, Acss1, Vsx1, Entpd6, LOC100043605, Pygb, Abhd12, Gins1, LOC668925, 4930519N13Rik, LOC668926, Nanp, LOC433486, LOC381390, 4930442J19Rik, LOC100043839, LOC100043840, 4921509C19Rik, Nsfl1c, Fkbp1a, Sdcbp2
Downstream geneLOC668929, BC052486, 5430405G05Rik, Psmf1, Rspo4, Angpt4, 5430432M24Rik, 2310046K01Rik, Scrt2, Srxn1, Tcf15, LOC100043843, Csnk2a1, Tbc1d20, Rbck1, Trib3, LOC628060, Nrsn2, Sox12, Zcchc3, 6820408C15Rik, EG629114, LOC668930, 9230107O10Rik, 9230002F21Rik, EG654457, OTTMUSG00000015852, Defb29, 4930525K10Rik, Defb19, OTTMUSG00000015859
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-451N02.T7 (MSMg01no451_n02.b1)MSMg01-451N02.TJ (MSMg01no451_n02.g1)
ACCAG539218AG539219
length734736
length of high quality
(start - end)
679 (53 - 731)634 (84 - 717)
definitionCHROMAT_FILE: MSMg01no451_n02.b1 PHD_FILE: MSMg01no451_n02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:12 2005CHROMAT_FILE: MSMg01no451_n02.g1 PHD_FILE: MSMg01no451_n02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGGGACTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCAGCGGTTGCTTGGCACAGGCTGCTAACCCCAGTTTAAA
GTCTCAGTCCTCAGAGCCTCAGGGGTGGCTAGAAGTCTCAGTCCAACCCC
AGATCTTCCAGGTCACAGTGAAGGTGCCCAGAGGGCTGAAGACCCTGTCA
CAGTCAGACAAGGACCCTCCTGTCCGCCAGTGCAGCAAAAAGGATCTTCT
AATCTACCAGCAAAGCCTGCTTCTCCCCAGGTCCCTGCCCCTCAGATCCT
GCCTCCCACATCCAGTCCTCCCTCTTTGGCAGGGGCTGCAGGTCGAAGGA
CTCCTGGTGCAGGAGTAGGAGCCCCAGAATAGGCCGGGCTGGTCTCGCTG
ACCATCACCTTCCCAGTTGGCACGTGGTTCGGGGCTTCCTGGCTACAAAG
GAGACAAGACAGACGGACATACCAGCACACGTGTAGAAAGATAAATGGAT
ACAGACAAAATAGGTCATTCCAAGATGTGCCACACACATGTGCATGCTCA
GGCGCCTGCCCACAAAGCAGGACAAGCAGCCAGGCCATCTGAGTCCCATG
CTGCATGCAGGCATGCCAGCTTCTGTCATATAAACATGCATGCTTATTTT
GGCACTTCCCAAGAACTTGAGCACACATTTGATGTATAGGAGGCCAAGGT
CAAGAGAGTAAGAAGCCCTCCCTAGTTGTTCTAG
AAAAAATCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGGTAGCATGCACCAA
GCCCTAGACGCCTACCTCCAGCTTCACATAAACTAGGTGTGATGGCACAC
ACCTGTAATTCCAGCATTCAGGAGGTGAACATAGTAGGATCATGTATAAT
GAGTTTGAGGCCAGCCTGGGATACATAAAACCCCACCTTAAAGTAACCCA
AAGCAAAAATGTTATACGATTCAGCAATTCTATTTCTAGGTTTAAACCCC
TAAAGGCTCGGAAGCAGAGTGTCTTAGTCAGGGTTTCTATTCCTGCACGT
ACATCATGACCAAGAAGCAAGTTGGGGAGGAAAGGGTTTATTCAGCTTAC
ACTTCCATACTGCTGTTCATCACCAAAGGAAGTCAGGACTGGAACTCAAG
CAGGTCAGAAAGCAGAAGCTGATGTGGAGCCATGGAGGGATGTTCCTTAC
TGGCTTGCTTCCCCTGGCTTGCTCAGCCTGCTCTTTTATAGAACCCAAGA
CTACCAGCCCAGAGATGGTCCACAAGGGGCCTTTCCCCCTTGATCACTAA
TTGAGAAAATGCCTTACAGTTGGATCTCATGGAGGCATTTCCTCAACTGA
AGCTCCTTTCTCTGTGATAACCCCAGCTGTGTCAAGTTGACACAAAACTA
GCCAGTACACAGAGTCATTCACAGAGTCAAATCCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no451_n02.b1 MSMg01no451_n02.b1 CHROMAT_FILE:
MSMg01no451_n02.b1 PHD_FILE: MSMg01no451_n02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:12 2005
         (679 letters)



>mm_chr2_151426778_151427856
          Length = 1079

 Score = 1230 bits (636), Expect = 0.0
 Identities = 663/672 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagcggttgcttggcacaggctgctaaccccagtttaaagtctcagtcctcagag 64
           |||||||| ||  |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 205 gaattcagtgggggcttggcacaggctgctaaccccagtttaaagtctcagtccttagag 264

                                                                       
Query: 65  cctcaggggtggctagaagtctcagtccaaccccagatcttccaggtcacagtgaaggtg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cctcaggggtggctagaagtctcagtccaaccccagatcttccaggtcacagtgaaggtg 324

                                                                       
Query: 125 cccagagggctgaagaccctgtcacagtcagacaaggaccctcctgtccgccagtgcagc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 325 cccagagggctgaagaccctgtcacagtcagacaaggaccctcctgtccaccagtgcagc 384

                                                                       
Query: 185 aaaaaggatcttctaatctaccagcaaagcctgcttctccccaggtccctgcccctcaga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaaaaggatcttctaatctaccagcaaagcctgcttctccccaggtccctgcccctcaga 444

                                                                       
Query: 245 tcctgcctcccacatccagtcctccctctttggcaggggctgcaggtcgaaggactcctg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tcctgcctcccacatccagtcctccctctttggcaggggctgcaggtcgaaggactcctg 504

                                                                       
Query: 305 gtgcaggagtaggagccccagaataggccgggctggtctcgctgaccatcaccttcccag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gtgcaggagtaggagccccagaataggccgggctggtctcgctgaccatcaccttcccag 564

                                                                       
Query: 365 ttggcacgtggttcggggcttcctggctacaaaggagacaagacagacggacataccagc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttggcacgtggttcggggcttcctggctacaaaggagacaagacagacggacataccagc 624

                                                                       
Query: 425 acacgtgtagaaagataaatggatacagacaaaataggtcattccaagatgtgccacaca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 acacgtgtagaaagataaatggatacagacaaaataggtcattccaagatgtgccacaca 684

                                                                       
Query: 485 catgtgcatgctcaggcgcctgcccacaaagcaggacaagcagccaggccatctgagtcc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 catgtgcatgctcaggcgcctgcccacaaagcaggacaagcagccaggccatctgagtcc 744

                                                                       
Query: 545 catgctgcatgcaggcatgccagcttctgtcatataaacatgcatgcttattttggcact 604
           |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| 
Sbjct: 745 catgctacatgcaggcatgccagcttctgtcatataaacatgcatgcttatttcggcaca 804

                                                                       
Query: 605 tcccaagaacttgagcacacatttgatgtataggaggccaaggtcaagagagtaagaagc 664
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 805 tcccaagaacttgagcacacatttgatgtatcggaggccaaggtcaagagagtaagaagc 864

                       
Query: 665 cctccctagttg 676
           ||||||||||||
Sbjct: 865 cctccctagttg 876


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1079
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1069
Effective search space:   715161
Effective search space used:   715161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)