BAC Information

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BAC

Clone NameMSMg01-451O05
Chromosome2 (Build37)
Map Location 145,804,216 - 145,977,539
singlet/doubletdoublet
Overlap genenone
Upstream geneSlc24a3, LOC627312, OTTMUSG00000015643, LOC433482, LOC100043810, Rin2, Nat5, Crnkl1, 4930529M08Rik, LOC100043563
Downstream geneInsm1, A230067G21Rik, LOC668918, Gm114, Xrn2, Nkx2-4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-451O05.T7 (MSMg01no451_o05.b1)MSMg01-451O05.TJ (MSMg01no451_o05.g1)
ACCAG539272AG539273
length732813
length of high quality
(start - end)		634 (73 - 706)159 (83 - 241)
definitionCHROMAT_FILE: MSMg01no451_o05.b1 PHD_FILE: MSMg01no451_o05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:17 2005CHROMAT_FILE: MSMg01no451_o05.g1 PHD_FILE: MSMg01no451_o05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,804,216 - 145,804,849)(145,977,381 - 145,977,539)
sequence
AGTCGGCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCACGTTTCTGAGCTGTTTAATGGAGGTTTCCTTAGCAGT
TTAGCAGTGACCAACCCACAGCTTCAACCTTGATTGCGTGTCTGCGCATG
TGTGCCGATACACATAATTTGAACCACTTTCTTTTGCTGGAATCTTCACA
TCTGTATCCTTAGGCCTGTCTAGGGCTATGGATAGAGACACTGCCTTGTC
AAGTTGCATTCTGGAAGAGCTAAGAAATGAACACTGCAGGCACTGACCAC
TCCCTGAATCGTCCCTGCTCTCTGACGTATGCTGTCCCTAAGAGCTCCCA
AATAAATGACCGTTTCTCAGTCTTCGACTCCGCTTCTGAGGGAACCAACA
TACAGTTGATCCAGTCTCTTTGTTTCAATGTGAAAGGATTTTCCTTATAC
ACAACAGACTGGACTGAGGTTTAGGCAGCCCATCTCCCTTGTCCTTCAAG
TGGAAGACTCTGAGATGACGTGAGCGGAGGACTGAGTACCAGTTGTCTGT
TGTGGTCATCTGTAATATACATGCAGTTGGTTCCTTTCCTTGTTCCTCTG
CCTCAGTCTTCTTCCTGTGTTCTCTGTTCTCTAATCTCTGACTCCAAGTC
TCTCTTCCCCTAGCAGCTGTGAAAACTCGCAACTTCACAAAAGCCTCAAT
CCTTCCAAGAAGAAAAATTGCAAAACTTAATG

TTTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTTGACTTAGCCTCTGG
CACTGGAATTACAATTAGGAAGTGCCACAAGGCCCAGCATTTTTACCCAG
GTGCCAGTAAAGACGCAGAAAGAGCTCTGCTGCAGGGTGTCTCTGCTCAG
TCACCCTTCCCTCTCACCATAGCATTTCTCTAGCCCCACCTGGCTCCTGG
AGAATTTNTTCATTCACTGTGTTACTGTCCTTTGAGTTCTTTGAACTTTC
AAAATCCCCTCTCCACCCTTGGTGGATGGAAGCACCCATTAAACTTCCAA
ATTTTTAATTTGGGAACACCCCCCCAAAAAATATTTAAAGCCCTCCTTTT
TTTCCAAAAGGGGGGGAAGCACCCCTTGGGGGTGTTGTGTCCAAAAAAAA
AAAACACCCCCCCCAATTGTGGGGCGTTCGGGTTTTTTTTGTCTTTTCTA
GTTTTCAGCTATATACCATCCCCTGTATGTTTATTGCGATTCCCGTCATC
TATCGTATTCTTTTTTTATTTATTTTTCCTTCCCCTTACTCTCCTTCTTT
TTGTCCTACTCATCCCACTACCAATCTTTTTTCTCTTCTTATCCCCACCC
AGAATCACCATTTATTATCCACCCTATATTTCTCCATACCTGTCCTATTA
TTGACGACTTATAAATAACGCCGCGCTTTCCCGATAAACATTTGCCTTAT
CTATCACTTTCTTACTCTCTTTCTTACTTTAGCTTATTTTTTTCGTAGGC
ACCTTAATCATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no451_o05.b1 MSMg01no451_o05.b1 CHROMAT_FILE:
MSMg01no451_o05.b1 PHD_FILE: MSMg01no451_o05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:17 2005
         (634 letters)



>mm_chr2_145804016_145805049
          Length = 1034

 Score = 1226 bits (634), Expect = 0.0
 Identities = 634/634 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gctgtttaatggaggtttccttagcagtttagcagtgaccaacccacagcttcaaccttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gctgtttaatggaggtttccttagcagtttagcagtgaccaacccacagcttcaaccttg 260

                                                                       
Query: 61  attgcgtgtctgcgcatgtgtgccgatacacataatttgaaccactttcttttgctggaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attgcgtgtctgcgcatgtgtgccgatacacataatttgaaccactttcttttgctggaa 320

                                                                       
Query: 121 tcttcacatctgtatccttaggcctgtctagggctatggatagagacactgccttgtcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcttcacatctgtatccttaggcctgtctagggctatggatagagacactgccttgtcaa 380

                                                                       
Query: 181 gttgcattctggaagagctaagaaatgaacactgcaggcactgaccactccctgaatcgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttgcattctggaagagctaagaaatgaacactgcaggcactgaccactccctgaatcgt 440

                                                                       
Query: 241 ccctgctctctgacgtatgctgtccctaagagctcccaaataaatgaccgtttctcagtc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccctgctctctgacgtatgctgtccctaagagctcccaaataaatgaccgtttctcagtc 500

                                                                       
Query: 301 ttcgactccgcttctgagggaaccaacatacagttgatccagtctctttgtttcaatgtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttcgactccgcttctgagggaaccaacatacagttgatccagtctctttgtttcaatgtg 560

                                                                       
Query: 361 aaaggattttccttatacacaacagactggactgaggtttaggcagcccatctcccttgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaaggattttccttatacacaacagactggactgaggtttaggcagcccatctcccttgt 620

                                                                       
Query: 421 ccttcaagtggaagactctgagatgacgtgagcggaggactgagtaccagttgtctgttg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccttcaagtggaagactctgagatgacgtgagcggaggactgagtaccagttgtctgttg 680

                                                                       
Query: 481 tggtcatctgtaatatacatgcagttggttcctttccttgttcctctgcctcagtcttct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tggtcatctgtaatatacatgcagttggttcctttccttgttcctctgcctcagtcttct 740

                                                                       
Query: 541 tcctgtgttctctgttctctaatctctgactccaagtctctcttcccctagcagctgtga 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tcctgtgttctctgttctctaatctctgactccaagtctctcttcccctagcagctgtga 800

                                             
Query: 601 aaactcgcaacttcacaaaagcctcaatccttcc 634
           ||||||||||||||||||||||||||||||||||
Sbjct: 801 aaactcgcaacttcacaaaagcctcaatccttcc 834


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space:   638976
Effective search space used:   638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no451_o05.g1 MSMg01no451_o05.g1 CHROMAT_FILE:
MSMg01no451_o05.g1 PHD_FILE: MSMg01no451_o05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:18 2005
         (159 letters)



>mm_chr2_145977181_145977739
          Length = 559

 Score =  308 bits (159), Expect = 1e-88
 Identities = 159/159 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttgacttagcctctggcactggaattacaattaggaagtgccacaaggcccagcattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 tcttgacttagcctctggcactggaattacaattaggaagtgccacaaggcccagcattt 300

                                                                       
Query: 61  ttacccaggtgccagtaaagacgcagaaagagctctgctgcagggtgtctctgctcagtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 ttacccaggtgccagtaaagacgcagaaagagctctgctgcagggtgtctctgctcagtc 240

                                                  
Query: 121 acccttccctctcaccatagcatttctctagccccacct 159
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 239 acccttccctctcaccatagcatttctctagccccacct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 159
Length of database: 559
Length adjustment: 8
Effective length of query: 151
Effective length of database: 551
Effective search space:    83201
Effective search space used:    83201
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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