Query= MSMg01no452_l23.b1 MSMg01no452_l23.b1 CHROMAT_FILE:
MSMg01no452_l23.b1 PHD_FILE: MSMg01no452_l23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:24 2005
(600 letters)
>mm_chr2_73047733_73048732
Length = 1000
Score = 1137 bits (588), Expect = 0.0
Identities = 598/602 (99%), Gaps = 4/602 (0%)
Strand = Plus / Plus
Query: 1 gaattccagaacagtctcag--ctacacactgagaccccgcctcaaaaaacaaacaaaaa 58
|||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaattccagaacag-c-cagagctacacactgagaccccgcctcaaaaaacaaacaaaaa 258
Query: 59 tacaaaaaaatagcttagctatgaatatgaccatttagtttctagtaattagcagataca 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tacaaaaaaatagcttagctatgaatatgaccatttagtttctagtaattagcagataca 318
Query: 119 tactaaaaaagcaagtttacttaactctctaatattacaaggttcttcagatggtttctg 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tactaaaaaagcaagtttacttaactctctaatattacaaggttcttcagatggtttctg 378
Query: 179 cctggttagttttatgccaacttgacacaagctggagccacctgagaggaagggacttca 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cctggttagttttatgccaacttgacacaagctggagccacctgagaggaagggacttca 438
Query: 239 attgaaaaactgcctctataactgtaagcaagactgcacagtattttcttaattagtgtt 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 attgaaaaactgcctctataactgtaagcaagactgcacagtattttcttaattagtgtt 498
Query: 299 tgacaggggtgggcccagctcacatgcctgggtaggtggtccttggttctacaaaaaagc 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tgacaggggtgggcccagctcacatgcctgggtaggtggtccttggttctacaaaaaagc 558
Query: 359 aagctgagcaaagccatctgaagcaggccagtaagcagcacccctgcatggtccctgcat 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 aagctgagcaaagccatctgaagcaggccagtaagcagcacccctgcatggtccctgcat 618
Query: 419 cagctcccgcctccaggttcccatctagtttgtgttcacactggcttctttcagtggact 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 cagctcccgcctccaggttcccatctagtttgtgttcacactggcttctttcagtggact 678
Query: 479 gcgattcagaatacataacccaagttaaccctttcctccacaagttgcttttggttgtgg 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 gcgattcagaatacataacccaagttaaccctttcctccacaagttgcttttggttgtgg 738
Query: 539 gtgttcatcagaacagcagcaactctaactagaacaatttctaaattgactgcccttatt 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 gtgttcatcagaacagcagcaactctaactagaacaatttctaaattgactgcccttatt 798
Query: 599 gc 600
||
Sbjct: 799 gc 800
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1000
Length adjustment: 10
Effective length of query: 590
Effective length of database: 990
Effective search space: 584100
Effective search space used: 584100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no452_l23.g1 MSMg01no452_l23.g1 CHROMAT_FILE:
MSMg01no452_l23.g1 PHD_FILE: MSMg01no452_l23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:24 2005
(570 letters)
>mm_chr2_73212104_73213074
Length = 971
Score = 969 bits (501), Expect = 0.0
Identities = 555/573 (96%), Gaps = 5/573 (0%)
Strand = Plus / Minus
Query: 1 tctgccctctcgccctggtatcctcatctccagtgaggctttcctccatgccaggtgcca 60
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 tctgccctctcgccctagtctcctcatctccagtgaggctttcctccatgccaggtgcca 689
Query: 61 gttcacatggccacatcctaggtcacatctggaaaagagaaacttgatagctcacaatct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 gttcacatggccacatcctaggtcacatctggaaaagagaaacttgatagctcacaatct 629
Query: 121 gactagaaactcctggacctaattcatatggccctgacccagctcctgtcagctattccg 180
||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 628 gacta-aaactcctggacctaattcatatggtcctgacccagctcccgtcagctattccg 570
Query: 181 catccctgcatctttgcctgtagagtgtagactagctccatcactgtcctatatctttgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 catccctgcatctttgcctgtagagtgtagactagctccatcactgtcctatatctttgc 510
Query: 241 ctgtagagtgtagactagctccatcactgtcctatatctttgcatgtagagtgtagacta 300
| ||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct: 509 atatagtgtgtagactacctccatcactgtcctgcatctttgcatgtagagtgtagacta 450
Query: 301 cctccatccctgtcttgctgctttagttcctgactccactctctggaatccactgccatc 360
|||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 449 cctccatcccagtcttgctgctttagttcctgactccactctctggaatctgctgccatc 390
Query: 361 tgacaccgccccgc-cc-cctccccgccttaccacccagtgaaactgctctctcatgaga 418
|||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tgacaccgcccc-cacctcctccccgccttaccacccagtgaaactgctctctcatgaga 331
Query: 419 ccaagcagttatcttttgccatcactatgtat-atagatttctactttgaattgctcttt 477
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 330 ccaagcagttatcttttgccatcactatgtattatagatttctactttgaattgctcttt 271
Query: 478 taaacattttacagctctctccttttctttgagattcatctttaagctcctgtctggaaa 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 taaacattttacagctctctccttttctttgagattcatctttaagctcctgtctggaaa 211
Query: 538 catagttacgattttaataaaaataatttaaag 570
|||||||||||||||||||||||||||||||||
Sbjct: 210 catagttacgattttaataaaaataatttaaag 178
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 971
Length adjustment: 10
Effective length of query: 560
Effective length of database: 961
Effective search space: 538160
Effective search space used: 538160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
