BAC Information

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BAC

Clone NameMSMg01-454B12
Chromosome2 (Build37)
Map Location 55,062,099 - 55,062,539
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666913, LOC626563, LOC100041792, LOC100042878, Galnt13
Downstream geneLOC666936, Kcnj3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-454B12.T7 (MSMg01no454_b12.b1)MSMg01-454B12.TJ (MSMg01no454_b12.g1)
ACCAG540952AG540953
length1,058724
length of high quality
(start - end)
---440 (76 - 515)
definitionCHROMAT_FILE: MSMg01no454_b12.b1 PHD_FILE: MSMg01no454_b12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:25:10 2005CHROMAT_FILE: MSMg01no454_b12.g1 PHD_FILE: MSMg01no454_b12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:25:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTTAATGCAGGTTTAGGAATATGAGGGTGTTCCTTTTCCTCTAAATAGTA
AGCGCCGCTCGGTGATTCCCTCATTGGTCGGTGCCGCTGCGGGCGGTGCG
ATTTTAGTGGGGGAAAATGGGGAGAAGAATAGAGATAAAAAAAGACCGCT
CTACGGGTGTCTACAGCCACATCGTCGCATCGCAAAAGCGCATTGGGGGT
TATATAAAAGACAAAACACTTTTGGAGTAGCAGCGCTATGCGGGACAATA
AACAAATATATTCAGAGTTTTTATCTTATGTTCGCAACCAGATTTGCGTT
TTTTCTTCTCCTCAGCGTTAGATTTACCGTTTTGTTTACTCGCATTTTTA
TCCCGTACCCTATATTCCCCACCTCCCCCCCTTTTTTGTGTTACTTCGTA
GGGATTGGGCGGCGCGCGATTCGCCCCTATATATCCCGGCCTTTCATGTT
GTTGAGTCATAAAGATCGGGAATACGATGGCCGGTCTTCTAGCGTTTTTA
GGCCGATTATGATTTGTTTCCGCCAATCTCCTTTATTCTCCCCCCCAACC
CCCTCTGTGGCTGTTTCTGCATCCTTCTGTTTGTGCGCTTCCTCACCGAA
TTTTTATTCCCATTCACTCTTTTTGGCTTTATGAGTTTATTTCCACTTAT
TGCGGATCAGTTTATTTATAACAATATTATAACGCTATAGTTTGTGGCAT
GGCACCTTTTATATAATATATAGATCATTGTTATATAGTCGGAGAGAGAT
GATAGGGGGTTATTTATAAGTAGAGGGCAGAACTGATTACATGTCCTCTG
GTATCAGGACTCGTGCTGTACGCTGTGTGTCGCGTCGAAGCATTTGGTGT
GCGATTCCTGACTAATACTTAATCGGTGAGTAGATAGAAGCGGAGNATGA
GTGGCATGAGAATTGATAGGGAGAGAGAGATAACTCACCTCACTTATGAT
TCGAAGCGCGATACGAATTAAGGNTATTTTGATCATATCGGACACACCCA
TGGGCTTTGTCGCGACAGGTAGGTTGATGTAGCGTTGTTCCCGAACATTG
TATTTGCG
NNTTACGATGATGTGGGAGGCCTGGCGGCCGCCTGTTTCAAAAATTTAGG
TGAACTATAGAATTTCAAAAAGAATTCATATTTCCTCATCGGAAGAGATA
GAGAGTATGGCCAAGTATGAAATTTTGATGGATGGATCTTGGTGGTCAGA
CTCAGGAATGTGTCAGGCATGAGGAAGTAACCAAATAAGGAGTCTGGTGG
TTTAGCAAAACACCAAGGAGAAAGAGCAGGCCCCACCAAAACCATGTTTT
CTGTGTTTGGGCCTGTCATTTTCTCTTTGGACATTTGGGAAATTTACTAG
GCTTTACTTAGAGTTTAGTATTTATGGAACTTTTATTGTAGGCTAAACGA
AGATGGCATTCTTAATTCTTTAATGTGTTATCTTAAAAGTATTAAGTACC
ATTGGGCATGTTTGTCTATACCTTCCATCCCATCACTTCAGAAGCAGGCA
CAGAAGGATCTCTGGGAGTTGAGTTGGGGGCCAAACTGGTCTACAAGATG
ATTTCTAGGATGGCCTGGGCTACACAGAGAAACCCTGTCTTGAAAAAAGC
AAAGCATAACAAAGCATAACAACAACAAGTTGTCTTGATCAAAGCTTTAG
ATGATATACCAAATGAGATTTAGATTTANACTCCCTTAAACTTATTGCTT
CCCTGTTAAGCATGATAACTGGGTAACTAATGAAGAACTCAGGGTCCATA
TACCGATATAAAAATTTTTTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no454_b12.g1 MSMg01no454_b12.g1 CHROMAT_FILE:
MSMg01no454_b12.g1 PHD_FILE: MSMg01no454_b12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:25:11 2005
         (440 letters)



>mm_chr2_55061896_55062736
          Length = 841

 Score =  768 bits (397), Expect = 0.0
 Identities = 430/441 (97%), Gaps = 1/441 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcatatttcctcatcggaagagatagagagtatggccaagtatgaaattttgatggatgg 60
           ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 644 tcatatttcctcatcagaagagatagagagtatggccaagtaagaaattttgatggatgg 585

                                                                       
Query: 61  atcttggtggtcagactcaggaatgtgtcaggcatgaggaagtaaccaaataaggagtct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 atcttggtggtcagactcaggaatgtgtcaggcatgaggaagtaaccaaataaggagtct 525

                                                                       
Query: 121 ggtggtttagcaaaacaccaaggagaaagagcaggccccaccaaaaccatgttttctgtg 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 524 ggtggtttagcaaaacaccaaggagaaagagcaggccccaccaaaaccatgtttgctgtg 465

                                                                       
Query: 181 tttgggcctgtcattttctctttggacatttgggaaatttactaggctttacttagagtt 240
           ||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||||
Sbjct: 464 tttgggcctgtcattttgtatttggacatttgggaaatttactaggctttacttcgagtt 405

                                                                       
Query: 241 tag-tatttatggaacttttattgtaggctaaacgaagatggcattcttaattctttaat 299
            || || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 gagctaattatggaacttttattgtaggctaaacgaagatggcattcttaattctttaat 345

                                                                       
Query: 300 gtgttatcttaaaagtattaagtaccattgggcatgtttgtctataccttccatcccatc 359
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 344 gtgttatcttaaaagtattaagtaccattgggcatgcttgtctataccttccatcccatc 285

                                                                       
Query: 360 acttcagaagcaggcacagaaggatctctgggagttgagttgggggccaaactggtctac 419
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 actttagaagcaggcacagaaggatctctgggagttgagttgggggccaaactggtctac 225

                                
Query: 420 aagatgatttctaggatggcc 440
           |||||||||||||||||||||
Sbjct: 224 aagatgatttctaggatggcc 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 841
Length adjustment: 9
Effective length of query: 431
Effective length of database: 832
Effective search space:   358592
Effective search space used:   358592
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)