BAC Information

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BAC

Clone NameMSMg01-454D06
Chromosome2 (Build37)
Map Location 86,474,397 - 86,474,630
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1001-ps1, Olfr1002, GA_x5J8B7W531T-1558688-1559570, Olfr1004-ps1, Olfr154, GA_x5J8B7W531T-1577060-1577325, Olfr1006, GA_x5J8B7W531T-1588603-1588734, Olfr1008, Olfr1009, Olfr1010, Olfr1012, Olfr1013, Olfr1014, Olfr1015, Olfr1016, GA_x5J8B7W3KVV-518538-519236, Olfr1018, Olfr1019, Olfr1020, Olfr1021-ps1, Olfr1022, Olfr1023, Olfr1024, Olfr1025-ps1, Olfr1026, Olfr1027-ps1, Olfr1028, Olfr1029, Olfr1030, Olfr1031, Olfr1032, LOC100042075, Olfr1033, Olfr1034, Olfr1533-ps1, Olfr1035-ps1, Olfr1036, Olfr1037, LOC100041372, Olfr1038, Olfr1039, Olfr1040, GA_x5J8B7W3KVV-170014-170572, Olfr1042, Olfr1043, Olfr1044, Olfr52, Olfr1045, Olfr1046, Olfr1047, Olfr1048, Olfr1049, Olfr1050-ps1, Olfr1051, GA_x5J8B7W3KVV-25848-25992, Olfr1052, Olfr1053-ps1, Olfr1054, Olfr1055, Olfr1056, Olfr1057, GA_x5J8B7TRQ4E-1174-939, Olfr1058, Olfr1059-ps1, Olfr1515, Olfr1062, Olfr1063-ps1, Olfr1064-ps1, Olfr1065, Olfr1066, Olfr1069-ps1, Olfr1070-ps1, Olfr228, Olfr1073-ps1, Olfr1075-ps1, GA_x5J8B7W4CQV-104617-103730, Olfr1076, LOC625853, Olfr1078-ps1, GA_x5J8B7W4CQV-78329-78805, Olfr1079, Olfr1080, Olfr1081-ps1, Olfr1082, GA_x5J8B7W4CQV-18360-18784, Olfr1083
Downstream geneOlfr1084, Olfr1085, Olfr1086, Olfr1087, Olfr1088-ps1, Olfr1089, Olfr1090, Olfr1091-ps1, GA_x5J8B7W3Y5M-123838-124302, Olfr1093, Olfr141, Olfr1094, Olfr1095, Olfr1096-ps1, Olfr1097, Olfr1098, Olfr1099, Olfr1100, Olfr1101, Olfr1102, Olfr1103-ps1, Olfr1104, Olfr1105, Olfr1106, Olfr1107, GA_x5J8B7W3Y5M-419033-418135, Olfr1109, Olfr259, LOC668402, Olfr1110, Olfr1111, Olfr1112, LOC228238, Olfr1113, Olfr1114-ps1, LOC546767, Olfr1115, Olfr1521-ps1, LOC100041923, Olfr1117-ps1, GA_x5J8B7TY7N2-4-429, LOC668424, Olfr1118, Olfr1119-ps1, Olfr1120, Olfr1121, Olfr1122, LOC668432, Olfr1123, Olfr1125, Olfr1126, Pramel7, Pramel6, LOC668439, Olfr1127-ps1, Olfr253-ps1, Olfr1128, LOC100042038, LOC668445, LOC668447, Olfr1129, Olfr1130, Olfr1131
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-454D06.T7 (MSMg01no454_d06.b1)MSMg01-454D06.TJ (MSMg01no454_d06.g1)
ACCAG541035AG541036
length744764
length of high quality
(start - end)		238 (74 - 311)433 (78 - 510)
definitionCHROMAT_FILE: MSMg01no454_d06.b1 PHD_FILE: MSMg01no454_d06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:25:19 2005CHROMAT_FILE: MSMg01no454_d06.g1 PHD_FILE: MSMg01no454_d06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:25:19 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
GGACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCAAGAGGATGCG
CGGAATTCCTCTATTACGAAAAACTGAGCCTTCTTAAGACCAAGGGCCTC
TCCTCCCATTGATATCCAACAAGTCCATGGTCTTTAAAATTGATGTGTAA
AATTTTCTTAACACTGGTAAATTTCGCTTGCATACCACATCTGTAGATTT
CTATGTATTTTAGCTCTCACCTACATGAAGTATTTCATAAGACACATCAC
TAATAAGATACACTCAAAGATTGCCCCAAATTCACCACTATTTCTTCGTC
ATACTGATAACTTGTTTTTTTTTAAAAAACATTAAAGGNCCAAGCTGTTT
AACTCCAACCCTTATTTTAGGAAGCCCTTTATTAACTCAAAATCCTTTCA
AAAATTTGGTCCCAGGCCCCCCACTTTTTTGGAAACCAGGTTTCCAAAAA
AAAAAAGGGGTGGGCCCCCCGAATTGGGAATCCTCTAAAAAAAAAATCTC
CCCCTTTGGAAAAATGGGTTTTAAAAAAAAAAAAAACCCCCTTTTCTAAA
AAAAAAAAACTTTTTTTTTTTATGGTCCCCATTTTTTTTATATTGGGGGC
AAATTTTTCTGTGTGGCTTTTTAAAAAAAAAACCCCCCTTTTCCACAATA
AATTTTTTTTTAAAAAAACTTTTTGGGGCCGGGATATATAAATAACACCC
ACCATTTTTTTTCCCCCCTCTTTAACCACCTTCCCCCTTTTTTT

CCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGTAAGAAGGTTACCTATTCAGT
AACTAATTAAGCATTACAAAGGAAGGAGCCAGAGCAGCTCAGGGCTGGTC
GGCAGAGGGTTTACTTGGGACAGCAGCCAGTCTCATCAAAATAAAGGAAT
ACACAATTGGCCTAGCTAATAGGTGGGTTAACCATGAAAGAGCTAGGGAA
TCCCAATGAGATAGAAACATTCAGTACAGGCTACATTGCATATTAGAAGC
AAGTTGGTGAATTCTTCTGTCTTATGGAGATTCTCCACAGATACTTAAAA
GTTATAATCATACAAGAATTTATCAGGGCTTAGGAAATAGGGAGGTTGTG
ATATTGCATTATTCATGAGAAGGTCTGCTAGAGCAGAACCTCCTGGCGCT
AGCTTTCACAAGGCTCAAAGGAGTAGCACTAATTGTGACTAGGGTGTAAA
ATCCTTACATGTCATTAAGCTGACCCTAGGCTTTATCTTTACTGTAAACA
TTTACCTGGTTCCTACAGGTCCTTTTGAAGTCATTCCTTTTGTTTTGTGT
CAGGTAACTTCGATGGACTTTGCCCGCTGTGACTCCCTATTCCCTTTATT
TTTTTGGAGATTATATACTTTCAGGGCGATTACTTTTTTTATTTCTCCAC
AATTCTTCTTTTGTTGTATACTGGTTTGCCCCCCTCCCTTATATACCTTG
GTGTATACTGCTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no454_d06.b1 MSMg01no454_d06.b1 CHROMAT_FILE:
MSMg01no454_d06.b1 PHD_FILE: MSMg01no454_d06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:25:19 2005
         (238 letters)



>mm_chr2_86474140_86474774
          Length = 635

 Score =  300 bits (155), Expect = 5e-86
 Identities = 216/237 (91%), Gaps = 3/237 (1%)
 Strand = Plus / Minus

                                                                       
Query: 2   tgagccttcttaagaccaagggcctctcctcccattgatatccaacaagtccatggtctt 61
           |||||| ||| | ||| |||||||||||||||||||||| ||||||||| ||||| ||||
Sbjct: 491 tgagccctctcaggactaagggcctctcctcccattgatgtccaacaaggccatgatctt 432

                                                                       
Query: 62  taaaattgatgtgtaaaattttcttaacactggtaaatttcgcttgcataccacatctgt 121
           |||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||
Sbjct: 431 taaaattgatgtgtaaaattttattaacactggtaaatttcccttgaataccacatctgt 372

                                                                       
Query: 122 agatttctatgtattttagctctcacctacatgaagtatttcataagacacatcactaat 181
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||  ||
Sbjct: 371 agatttttatgtattttagctctcacctacatgaagtatttcataagacacatcac--at 314

                                                                    
Query: 182 aagatacactcaaagattgccccaaattcaccactatttcttcgtcatactgataac 238
            ||||||||||||||| ||||||  | |||| ||||||||||| ||| |||||||||
Sbjct: 313 -agatacactcaaagagtgcccctgagtcacgactatttcttcttcacactgataac 258


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 635
Length adjustment: 9
Effective length of query: 229
Effective length of database: 626
Effective search space:   143354
Effective search space used:   143354
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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