BAC Information

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BAC

Clone NameMSMg01-454L21
Chromosome2 (Build37)
Map Location 7,989,305 - 7,989,753
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040648
Downstream geneLOC672230
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-454L21.T7 (MSMg01no454_l21.b1)MSMg01-454L21.TJ (MSMg01no454_l21.g1)
ACCAG541446AG541447
length1,168761
length of high quality
(start - end)
---449 (73 - 521)
definitionCHROMAT_FILE: MSMg01no454_l21.b1 PHD_FILE: MSMg01no454_l21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:02 2005CHROMAT_FILE: MSMg01no454_l21.g1 PHD_FILE: MSMg01no454_l21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTGAGCGCCGCGAGCATAGTATAAAACCACGGCGCGACAACTTCCCATGG
CGAGGCGGTCGGAGTGGTCGTGCGCTTTTCTCCCTTGACCCCGCGATGTT
GTGGTCTGCTTTGTTGCATATTCATCGGCTCCTATTTTACCCACCCCCCC
ACCCTCCCCCCTCCCTACCTCATCTACGTGCTATACTACTCTATAATTAT
TGCAGAGACGACGACGACGTGCTATCGGGCCCGCGCCGGATGCGTAACCG
ACACGTGCTTGCTCTCTACCTGTAGTGTGTCCTACGCTCCGCGACGCGGC
GGCGCGCGCCTCGTTCGATATGTATGTGTGTTCGGAGGTATTGATGTCCC
CCCGCCACATCCTTTTTGGTGCTATCAGTACGCGGCCGGGCCTATCCCCG
GCCGGTCGGTTATTAGATATCCTTGACCGCCACTAGCCCCACGGCTCCTA
TACGCAATATGAAGCGAGATACAGACACGAGTACGGGTTGATAATCAATG
AGCGAAAAAACGAACACCCCCATCACACACCTACCCCTATATGATACTCG
TATTATATTGTATATATAAGGGTGGACACCCACGTACACCACATACTCAC
TCCACTAATATTTAATAATCTTATACTATTCCGACCCGCGCGCTGTATAT
GCATACCGCTTTTATAACAAGCACTATAGTGAAAATACATATTTCGTTCG
CGGCTCTAAGACACAATAACCTCGGTGCGAACAAACTAACAAAGGACGCG
GCGAGGACGGGAATACGACGATCCTCGCGCGTAACAGTTAGTACAAATTC
ACCACTGATATCCCCACGCTGTCGTTTCTCAGCACCACGACATCCGCTCC
ACCGGCCGCCTTCGATTATTGCGGCCGTGACGAGTCCTACCTCGACCGAC
GGCTTTGTCTCGCCCGCTTCTTCCCTCTTCACTCCCTTCTATATCCCTAC
GCCGCCGCGTTCACGTATATCTGTCCCGCCTGTTTTCCTTTCTCTCTTGT
TTGTTCTGAAATCTGCTCCGGTCAACTATGTCATATCGTCTAGTCGTAGC
ATACCCCTTCACATTAACGCATCGTACAATCAGATACAACGGCGGACCAC
GATAAGTATTAACACACGCCGCGAGTCTATCGTCCGCACTCCACGAGCTC
TCTCAGTTTCTCCGTTCC
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGGTATCTTGACTTCACAAGTACAGGTG
GGTCCCATCTCATTAACAAACAAACCAGCACTTACATTGCAGTGCTCACT
CATGTTTAAATGATAAAACAAGGCAATCATTGTCAATAAACATATACCTT
GTAAATTATTCAGGATGCATAAATGTAATGATCCTATGAGATTGGACTGG
GGATAAAATCAAGTTTATGCCAGGGGCAGTTTGCATCAGTCCAGTTTACT
TTGTGTACATTAATGTGACTGTATTAACTTTTCAGTTTCACTTACATTTT
TCTTTCATTTTTGGTAACTACCTCCTTCAAATTCCTTTGACAACCTGAGA
ATATCTTGCAGCTGAACACAATATTAATTACATTTCAAAGCAAACCTTTA
TTCATTTGGGGGCAATCTGTGAAACAGAAATCTGTGACTGAAGCTGCTGC
CAAGCCAATTACTGCAAAATAACTTAAATATGTCTGGACAGATTGCATTT
CTCCTATTGTTAGATTGTTTATTCCATAGATCAAAAAGCTACATTCCCTT
TAATTTAAAATGAACCACTCCCATAGTTTAATATATCCCATACCCCCTTC
TGATTGTAAAAAAAATAATGATAANACCGGCCGTGGTTAAGGAAATATTG
TCCTGCCTTGGAAAAAAACCAAAAAATAAGTTTCTTTTCTTCAAAAAATT
TAAAAGCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no454_l21.g1 MSMg01no454_l21.g1 CHROMAT_FILE:
MSMg01no454_l21.g1 PHD_FILE: MSMg01no454_l21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:26:02 2005
         (449 letters)



>mm_chr2_7989105_7989953
          Length = 849

 Score =  861 bits (445), Expect = 0.0
 Identities = 448/449 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggtatcttgacttcacaagtacaggtgggtcccatctcattaacaaacaaaccagcact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggtatcttgacttcacaagtacaggtgggtcccatctcattaacaaacaaaccagcact 260

                                                                       
Query: 61  tacattgcagtgctcactcatgtttaaatgataaaacaaggcaatcattgtcaataaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacattgcagtgctcactcatgtttaaatgataaaacaaggcaatcattgtcaataaaca 320

                                                                       
Query: 121 tataccttgtaaattattcaggatgcataaatgtaatgatcctatgagattggactgggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tataccttgtaaattattcaggatgcataaatgtaatgatcctatgagattggactgggg 380

                                                                       
Query: 181 ataaaatcaagtttatgccaggggcagtttgcatcagtccagtttactttgtgtacatta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ataaaatcaagtttatgccaggggcagtttgcatcagtccagtttactttgtgtacatta 440

                                                                       
Query: 241 atgtgactgtattaacttttcagtttcacttacatttttctttcatttttggtaactacc 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgtgactggattaacttttcagtttcacttacatttttctttcatttttggtaactacc 500

                                                                       
Query: 301 tccttcaaattcctttgacaacctgagaatatcttgcagctgaacacaatattaattaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tccttcaaattcctttgacaacctgagaatatcttgcagctgaacacaatattaattaca 560

                                                                       
Query: 361 tttcaaagcaaacctttattcatttgggggcaatctgtgaaacagaaatctgtgactgaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttcaaagcaaacctttattcatttgggggcaatctgtgaaacagaaatctgtgactgaa 620

                                        
Query: 421 gctgctgccaagccaattactgcaaaata 449
           |||||||||||||||||||||||||||||
Sbjct: 621 gctgctgccaagccaattactgcaaaata 649


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 849
Length adjustment: 10
Effective length of query: 439
Effective length of database: 839
Effective search space:   368321
Effective search space used:   368321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)