BAC Information

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BAC

Clone NameMSMg01-454O19
Chromosome2 (Build37)
Map Location 180,179,418 - 180,352,770
singlet/doubletdoublet
Overlap geneSlco4a1, Ntsr1, 1600027N09Rik, Ogfr, Col9a3
Upstream geneCdh4, Taf4a, Lsm14b, Psma7, Ss18l1, Gtpbp5, Hrh3, Osbpl2, LOC100039470, Adrm1, Lama5, Rps21, Cables2, BC066135, Gata5, EG622283
Downstream geneTcfl5, Dido1, 2310003C23Rik, 1700019H03Rik, Bhlhb4, OTTMUSG00000016394, Ythdf1, Birc7, C030019F02Rik, LOC100039607, Arfgap1, Col20a1, Chrna4, Kcnq2, Eef1a2, 2700038C09Rik, Ptk6, Srms, LOC622592, BC051628, BC006779, Gmeb2, EG665467, Stmn3, Rtel1, Arfrp1, Zgpat, Lime1, Btbd4, BC050777, Tpd52l2, Dnajc5, Uckl1, Znf512b, Samd10, Prpf6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-454O19.T7 (MSMg01no454_o19.b1)MSMg01-454O19.TJ (MSMg01no454_o19.g1)
ACCAG541585AG541586
length767754
length of high quality
(start - end)
378 (72 - 449)387 (77 - 463)
definitionCHROMAT_FILE: MSMg01no454_o19.b1 PHD_FILE: MSMg01no454_o19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:16 2005CHROMAT_FILE: MSMg01no454_o19.g1 PHD_FILE: MSMg01no454_o19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(180,352,426 - 180,352,770)(180,179,418 - 180,179,804)
sequence
NATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCGC
GGAATTCAGATGTTTCCTTTGAAAATCCTATACATCTTTTTTGTTTGTTT
GTTTTGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCCAGCTGTCCTGGA
ACTCACTCTGTAGTCCAGGCTGGCCTCAAACTCAGAAACCTGCCTGCCTC
TGCCTCCCAAGTGCTGGGATTAAAGGCGTGTGCCACCACGCCCGGCTGCC
ACTGCCTGGTCCTATACATCTTTTAAAATGGTAGTCACTCACATGATACC
AGATGGCCATACTCTGGAGTATTGGCAGAGAAAACAGTCATTGGAAAGTT
GATTTGGGACAGACACTGCACTGAGACAAGATGAATTCTTCATGTTTTCT
CTCTAGTGTTGAAATTCCTCAATTTCCAAGGATTTTAAGAACAGGTGGAA
ATGATGTGCAAATTATATCAAGTCCATCTGCATACCAGAGTTTTTAAGGC
TAACCTTGAAGATGACGATAGACTCCTAGAATCGCTTCCCATACAAATTT
TTTTCTTAAAGCTACTTTTTGGAAATGAAAACGCTATTTGGCCATTCAGC
TATTACCAATTGGAACCCGGAATGTTTATTTTTTACCCATACTTCCCTTC
TCTTTATTTTTTTTCACCTACTTTTCCCACCCCTTTTTTCTCCACTTTAT
CCCACCCTTCCCCAATATACATTATATATCCTCCCTTATTTTTTTTTACT
CTCCCCTCTCTTTATAG
NCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCCCACTCAGTGACTTCTGGTGAC
TGGGATCACATGACAATGGTTTTCTTGTGACTGGCCCCTCAGGGGCCAGG
GAGATGGCTTCTGGGCAAACTTAATAGCCTGAGTCTGATCCCTGGATCCC
ACAGCAGAAGGAGAAAAGAAAATCTGACCTCTGGCTTCCATATACACAGC
ACAGCATACATGCTATGTCACACACACAATAATAATGACAAATATTAAAA
AATTGAAAATAGAATCCTCTTTTTTCATCTACATTCTGGTTTGGTCAGAA
TCCTTCCTCTGTGAGGCTGAGTAACGGCCTGATACATGAGCAGAGCAGCT
TATTCATCTATGTATCCATTGAGAAATACTTGTCTCCTCATGGTTGCTAT
AAATAGAGTTGTGCAAATCTTCTTTTGTGTTGGTGTCTCCAGGGCTTTTT
GCAATATGCCCCGAGCTAAATCGCATGAGGGTACAGAAAATCTATTTTTA
ATTTGAGGAACTAACAGGTCGTCCTCCTGTTTGATATNCTCTTCTAACGT
CCAACAACGCCATCGTTGTATTTCCAAGTAAGCCCTTGGGAATTAATCTT
TATTTTTTACTCTCTCCCCCCAATAGTCAAAATTGAGGCCCCCCCCTTCT
TAACTTCCCCCCCTCCTGTACTTATTTTTTTCCCTATCTCCTACTTTTAT
TTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no454_o19.b1 MSMg01no454_o19.b1 CHROMAT_FILE:
MSMg01no454_o19.b1 PHD_FILE: MSMg01no454_o19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:26:16 2005
         (378 letters)



>mm_chr2_180351993_180352770
          Length = 778

 Score =  567 bits (293), Expect = e-166
 Identities = 323/345 (93%), Gaps = 19/345 (5%)
 Strand = Plus / Minus

                                                                       
Query: 53  tctctgtgtagccccagctgtcctggaactcactctgtagtccaggctggcctcaaactc 112
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tctctgtgtagtcccagctgtcctggaactcactctgtagtccaggctggcctcaaactc 719

                                                                       
Query: 113 agaaacctgcctgcctctgcctcccaagtgctgggattaaaggcgtgtgccaccacgccc 172
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 agaaacctgcctgcctctgcctcccaagtgctgggattaaaggcgtgtgccaccacgccc 659

                                                                       
Query: 173 ggctgccactgcctggtcctatacatcttttaaaatggtagtcactcacatgataccaga 232
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 ggctgccactgcctggtcctatacatcttttaaaatggtagtcactcacatgataccaga 599

                                                                       
Query: 233 t-------------------ggccatactctggagtattggcagagaaaacagtcattgg 273
           |                   ||||||||||||||| | ||||||||||||||||||||||
Sbjct: 598 tggcacaggctgcctacaaaggccatactctggaggagtggcagagaaaacagtcattgg 539

                                                                       
Query: 274 aaagttgatttgggacagacactgcactgagacaagatgaattcttcatgttttctctct 333
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 aaagttgatttgggacagacactgcactgagacaagatgaattcttcatgttttctctct 479

                                                        
Query: 334 agtgttgaaattcctcaatttccaaggattttaagaacaggtgga 378
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 agtgttgaaattcctcaatttccaaggattttaagaacaggtgga 434


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 378
Length of database: 778
Length adjustment: 9
Effective length of query: 369
Effective length of database: 769
Effective search space:   283761
Effective search space used:   283761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no454_o19.g1 MSMg01no454_o19.g1 CHROMAT_FILE:
MSMg01no454_o19.g1 PHD_FILE: MSMg01no454_o19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:26:16 2005
         (387 letters)



>mm_chr2_180179218_180180004
          Length = 787

 Score =  687 bits (355), Expect = 0.0
 Identities = 379/387 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccccactcagtgacttctggtgactgggatcacatgacaatggttttcttgtgactggcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccccactcagtgacttctggtgactgggatcacatgacaatggttttcttgtgactggcc 260

                                                                       
Query: 61  cctcaggggccagggagatggcttctgggcaaacttaatagcctgagtctgatccctgga 120
           ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctcaggggccagtgagatggctcctgggcaaacttaatagcctgagtctgatccctgga 320

                                                                       
Query: 121 tcccacagcagaaggagaaaagaaaatctgacctctggcttccatatacacagcacagca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcccacagcagaaggagaaaagaaaatctgacctctggcttccatatacacagcacagca 380

                                                                       
Query: 181 tacatgctatgtcacacacacaataataatgacaaatattaaaaaattgaaaatagaatc 240
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 tacatgctatgtcacacacacaataataatgacgaatattaaaaaattgaaaatagaatc 440

                                                                       
Query: 241 ctcttttttcatctacattctggtttggtcagaatccttcctctgtgaggctgagtaacg 300
           |||   ||||||| ||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 441 ctcaagtttcatccacattctggtttggtcagaatccttcctctgtgaggctgagtaaca 500

                                                                       
Query: 301 gcctgatacatgagcagagcagcttattcatctatgtatccattgagaaatacttgtctc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcctgatacatgagcagagcagcttattcatctatgtatccattgagaaatacttgtctc 560

                                      
Query: 361 ctcatggttgctataaatagagttgtg 387
           |||||||||||||||||||||||||||
Sbjct: 561 ctcatggttgctataaatagagttgtg 587


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 787
Length adjustment: 9
Effective length of query: 378
Effective length of database: 778
Effective search space:   294084
Effective search space used:   294084
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)