Query= MSMg01no455_l18.b1 MSMg01no455_l18.b1 CHROMAT_FILE:
MSMg01no455_l18.b1 PHD_FILE: MSMg01no455_l18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:19 2005
(464 letters)
>mm_chr2_116860781_116861645
Length = 865
Score = 833 bits (431), Expect = 0.0
Identities = 451/459 (98%), Gaps = 5/459 (1%)
Strand = Plus / Minus
Query: 7 gaattccattttcc--aatgctcattcaagtacgagcctttttctatgtcccccaagctt 64
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 gaattcca--ttccctaatgctcattcaagtacgagcctttttctatgtcccccaagctt 497
Query: 65 cctttcccacaccaatctcactttttccctttttcttttttccttaggtggatgaaagct 124
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 496 cctttcccacaccaatctcactttttccctttttcttttttccttaggaggatgaaagct 437
Query: 125 gtgtttccactttgtgtgaacatacccatgtggctgtctatgctcaatgtctcctttagc 184
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 gtgtttccactttgtgtgaacatacccatgtggctgtctatgctcaatgtctcctttagt 377
Query: 185 cttagcttaaaatggccctttctcccctccttctgacttgttcttgtgaggtccctttaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 cttagcttaaaatggccctttctcccctccttctgacttgttcttgtgaggtccctttaa 317
Query: 245 ctaggctgaggatctgtgtgtgtttgtcttagaactgtttctgcaaacacgtgcatagag 304
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 ctaggctgaggatctgtgtttgtttgtcttagaactgtttctgcaaacacgtgcatagag 257
Query: 305 tccaagtatactc-ttttttttttcctcctccttaggactaacatggggttgtcttagtc 363
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 tccaagtatactctttttttttttcctcctccttaggactaacatggggttgtcttagtc 197
Query: 364 agggttactatcactctgatgaaaaccatgaccaaagcaacctggggaggaaaggctttc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 agggttactatcactctgatgaaaaccatgaccaaagcaacctggggaggaaaggctttc 137
Query: 424 tttggcttacacttccacatcacagaccatccctgaagg 462
|||||||||||||||||||||||||||||||||||||||
Sbjct: 136 tttggcttacacttccacatcacagaccatccctgaagg 98
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 865
Length adjustment: 10
Effective length of query: 454
Effective length of database: 855
Effective search space: 388170
Effective search space used: 388170
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no455_l18.g1 MSMg01no455_l18.g1 CHROMAT_FILE:
MSMg01no455_l18.g1 PHD_FILE: MSMg01no455_l18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:19 2005
(450 letters)
>mm_chr2_116703365_116704215
Length = 851
Score = 818 bits (423), Expect = 0.0
Identities = 441/447 (98%), Gaps = 1/447 (0%)
Strand = Plus / Plus
Query: 1 actgacatatacgtgtgctcaggtgtaaaaaa-tgtatattatttgttttatgtgaatga 59
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 201 actgacatatacgtgtgctcaggtgtaaaaaaatgtatattatttgttttatgtgaatga 260
Query: 60 ctttccattaaaggagacataacggagctaattcgagataatcacaggaattactgtcaa 119
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctttccattaaaggagacataatggagctaattcgagataatcacaggaattactgtcaa 320
Query: 120 tatcaaaaatctctagtaatttcttagtctttggtgggtggttcttagtctctgaaactc 179
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 321 tatcaaaaatctctagtaatttcttagtctttggtgggtgattcttagtctctgaaactc 380
Query: 180 agaccatagcaaggatgtgcccataagcctctgcaggcaaaactggatcttcatggtatt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaccatagcaaggatgtgcccataagcctctgcaggcaaaactggatcttcatggtatt 440
Query: 240 gctctacctgctggtctctgcatttatccagcacaggttctcatgtccatgaatgaagct 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actctacctgctggtctctgcatttatccagcacaggttctcatgtccatgaatgaagct 500
Query: 300 gcttcacagattggcacgctactttcgaacacgaggaagctccgtggctctatctgcacc 359
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 501 gcttcacagattggcacgctactttcgaacacgaggaaactccgtggctctatctgcacc 560
Query: 360 atccgatttaaaactgcaaagtccttccttgctcctatgttcgcagtctttctttggatg 419
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 561 atccgatttaaaactgcaaagtccttccttgctcctatgttcgcattctttctttggatg 620
Query: 420 aaataaaatcaacctacacacacacac 446
|||||||||||||||||||||||||||
Sbjct: 621 aaataaaatcaacctacacacacacac 647
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 851
Length adjustment: 10
Effective length of query: 440
Effective length of database: 841
Effective search space: 370040
Effective search space used: 370040
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
