BAC Information

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BAC

Clone NameMSMg01-455N22
Chromosome2 (Build37)
Map Location 107,505,353 - 107,505,857
singlet/doubletsinglet
Overlap genenone
Upstream geneC130023O10Rik, LOC677260, 2700007P21Rik, LOC383739, Fshb, Kcna4
Downstream geneLOC100043078, LOC668790
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-455N22.T7 (MSMg01no455_n22.b1)MSMg01-455N22.TJ (MSMg01no455_n22.g1)
ACCAG542306AG542307
length729731
length of high quality
(start - end)		512 (49 - 560)504 (80 - 583)
definitionCHROMAT_FILE: MSMg01no455_n22.b1 PHD_FILE: MSMg01no455_n22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:30 2005CHROMAT_FILE: MSMg01no455_n22.g1 PHD_FILE: MSMg01no455_n22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTCTAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCAGACTTTAACTAAACAAATCCTTCCCTGGCCACGAGTAGCC
AGTGTTATAATCACCTCATTTCCACTCCTTCTTTTACTTTTATAAGATAA
AAGTCTACTCTGTCTGACTATTAAGCTATTTAGTCCCCAAACACTATCAG
TTAGCTTTTGAATTAAGACTGTTACTCAGCTTTAAAAGGCAATTTCAGGC
TACAGTGAAGACAAATTGCTTGAGAAAAGAGGTCTGGTTCCATGTATGCA
CACATTGGCTGTCACCATGGCTGGTGAACGGCATCTCATTTAAAATTCAA
TTTGGGGAATTATGGTGATTCTGAAGGAGAGAAGCATTAATGAAATGGGC
CACAATGTGGCATTTTTCTATTTTAAATGGGTTGGGAAAAAAAACACTGT
AAATACAAGGGTTCTGCTTATAGACCTTTGCTGGATAAAATTCCTATGAG
AAAAGGTAAAAAGGGGAATTAAGAATTAAGGCACATGTTTTACTTGATTT
TTTTGTTGTGATATGTGCCAGGAGACATAGGAACATGTAGAGGTAAAGAA
TTATTTCATTTTATAGGTGATAGTCCAACAACGAGGGAAAATCAAGGCAA
AAGCTCAAGTGAGGAACTTGAGGTAGAATCCATGTAGAAACATGCTCAGT
GGCCATTTTACCAAAATCCCTTTTCCCTN

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATAGGAAATAAGTAAGGTTAT
CTATTCAGTAACATTCAAATATACTTCTAGTAGAAACAGTGAAACTAATT
AGGCATTACAAAGAACGGAGCCAGAATAGCTCAGGGCTGGTCTGCAGAGT
GTTTACTTGGGACAATAGCCAGTCTTATTCAGACAAGGGAATACACAATG
GCCTAGCGAATAGGTGGGTTTACCATGAGAGAGTTAGGGAATACTCCTGA
GACAGGTTTCTTCACTAGAACCCCTGGTGGTGGGTTTAACAATAGACTAG
CATTATACTTGGCTCCCTTTTTAGAGGTAAACAGCAGCGCCTGGTCCCTG
CCATCTTTTGATGTATACATTCCTTATGTTTTGTGTCACTGTAACTCAGA
GGATGTATCTCACCTGGTTTCTTGTTTTTCTTCTGTATAAAAAGTTCGAT
GCTCAACTTGACAAATTACATTCAGATTCTACACAATCTCCTGTGTTATG
TCTGTCTGTCATTCATTCGCCGACTTCTTGTCCACCTGTAACCAGAGGCC
CATTTTACACAGACAGGGACCAAGAAGGGTCTGCAGCAGACCAAAATAGT
AAATTCTCAAAAGAAATGCTTGGTCATACATACTAAGGTGGGCAATTTAA
AAATATAGAANAAGAAGGTATGAATTGTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no455_n22.b1 MSMg01no455_n22.b1 CHROMAT_FILE:
MSMg01no455_n22.b1 PHD_FILE: MSMg01no455_n22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:30 2005
         (512 letters)



>mm_chr2_107505149_107506057
          Length = 909

 Score =  924 bits (478), Expect = 0.0
 Identities = 500/508 (98%), Gaps = 3/508 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccagactttaactaaacaaatccttccctggccacgagtagccagtgttataatc 64
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 gaattctagactttaactaaacaaatccttccctggccacgagtagccagtgttataatc 650

                                                                       
Query: 65  acctcatttccactccttcttttacttttataagataaaagtctactctgtctgactatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 acctcatttccactccttcttttacttttataagataaaagtctactctgtctgactatt 590

                                                                       
Query: 125 aagctatttagtccccaaacactatcagttagcttttgaattaagactgttactcagctt 184
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 aagctatttagtctccaaacactatcagttagcttttgaattaagactgttactcagctt 530

                                                                       
Query: 185 taaaaggcaatttcaggctacagtgaagacaaattgcttgagaaaagaggtctggttcca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 taaaaggcaatttcaggctacagtgaagacaaattgcttgagaaaagaggtctggttcca 470

                                                                       
Query: 245 tgtatgcacacattggctgtcaccatggctggtgaacggcatctcatttaaaattcaatt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 tgtatgcacacattggctgtcaccatggctggtgaacggcatctcatttaaaattcaatt 410

                                                                       
Query: 305 tggggaattatggtgattctgaaggagagaagcattaatgaaatgggccacaatgtggca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 tggggaattatggtgattctgaaggagagaagcattaatgaaatgggccacaatgtggca 350

                                                                       
Query: 365 tttttctattttaaatgggttgggaaaaaaaacactgtaaatacaagggttctgcttata 424
           ||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||||||
Sbjct: 349 tttttctattttaaatgggttggg--aaaaaacactgtaaataaaagggttctgcttata 292

                                                                       
Query: 425 gacctttgctggataaaattcctatgagaaaaggtaaaaaggggaattaagaattaaggc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 291 gacctttgctggataaaattcctatgagaaaaggtaaaaaggggaattaagaattgaggc 232

                                       
Query: 485 acatgttttacttgatttttttgttgtg 512
           ||||||||||||||| |||| |||||||
Sbjct: 231 acatgttttacttga-ttttctgttgtg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 909
Length adjustment: 10
Effective length of query: 502
Effective length of database: 899
Effective search space:   451298
Effective search space used:   451298
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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