BAC Information

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BAC

Clone NameMSMg01-455O11
Chromosome2 (Build37)
Map Location 159,664,209 - 159,749,138
singlet/doubletdoublet
Overlap genenone
Upstream geneDhx35, LOC100043891, LOC100043689
Downstream geneGm826, Mafb, LOC100043892, Top1, Plcg1, Zhx3, Lpin3, Emilin3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-455O11.T7 (MSMg01no455_o11.b1)MSMg01-455O11.TJ (MSMg01no455_o11.g1)
ACCAG542332AG542333
length725717
length of high quality
(start - end)
335 (315 - 649)240 (319 - 558)
definitionCHROMAT_FILE: MSMg01no455_o11.b1 PHD_FILE: MSMg01no455_o11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:32 2005CHROMAT_FILE: MSMg01no455_o11.g1 PHD_FILE: MSMg01no455_o11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:32 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(159,664,209 - 159,664,543)(159,748,899 - 159,749,138)
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTTTTCTCTATGTTCTGGGTGGATTCCTCATATTTCCATAATGG
ACATTCAGATATTTGGATCTTGCCCTTTTTTCACATGTCTATTTCTTTTC
AACATTCATAGTCTGGATAATCGTATGTCAAGGTCTGATCCAACCTGAAG
AGGGTACGCTTCATATTCTCTGTGTTATGCTGAGTCTAGTCTTTATGCTG
CTCCCTGAGTGGTAAGGTTTGTGGTGGCTGGAAGCAGTTTTAAGATATGG
GTTCAAGTTTATATCTCCATTAATGTGCTAAGGAATCTCGGGAAAATTAC
CCTTTCTTCTGTCATCTTCTCAATTTTAATATAGTCTCAAGCTTAGTCAG
ATCTACCTTCTTGGTTTGTATTGCTTTGAAAAATTAGAAAACCCGTTCTC
ATGGACTTGTAATTGAAGCCACTTTCTGTCTTTATGCCACAAAAGCTTAG
GGGCTTGAATGTAAATTTGGGGTTACTAATATCTAGAAGAGGGTTTTCTA
GGTAAAGGGGGAGGGGCAGAGCAATGAGCCCAAAGAGTTTAAGTATGGAC
AGAACAGAGAATGTACTTGATTGGCACACAAAGAACAGAGTGAACATTGG
TTAGAAAATAGGAAGGAGACTACTCAAAGCTATCCAGTTATGCTTTTACC
AACAAACAAATCTTATGGCACAGAG
CAATATATTGGTAGCTTTGGNGGNCGTCCGTACAAACTAATTTAGGNNGA
ACNANAGATCGCTAAACAAAAGNCANGANCACTCTGCTATAACATTATTG
GAAAGTAGTGATACTTTGCAGGATGTAGCCTTATTGGAGGAAGCTGGTCG
TGTGGAATGATGTGTGCTGGAAGTTGTATCCCATCCAAGGACTCTTCCTT
CTCTCTGTTTCTTGGTTGGCAGGAGGTGGACAGCCTCTTCTGCTTTTTAC
CTCTACCACCTTGGTGTTCTGCTCACTGCATCTTCACACTGATGGAGCCA
GCTAGCCTTCAATTATTACCAGTGAAAGTGTCAGCCAAAATACACCCTTC
ATCTTTTAAGTTACTCTTCTCTGGTGTTTTGTCATAACGATAGAAGCCTA
AAGTTTTCTACTTTAAGGTCTTCCTTCATATATGCTGGGCTCTCTACCTG
CTGTCAGAGAAAGCTTGCCTGGGTTTCTGTCCCTGCTGTCTAAGAGTATA
TGATGTCTGCTGAGAATGTCTCCATCTCCAAAATTGAATTCCTGGATAGA
GGACATGACCTTCAAACTCTGCAGGTAGCAAGATATCGAAATGAAATTTT
CACATAGCAGTAGCCTGGATAGCTAAGGTTTTATGTTTTATTCAGTATTT
CCAATAAAGTTGCATATTGTTTCATATGTTAAGCTTCTGAAACAACTGTG
GTGAACATAAAATGATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no455_o11.b1 MSMg01no455_o11.b1 CHROMAT_FILE:
MSMg01no455_o11.b1 PHD_FILE: MSMg01no455_o11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:32 2005
         (335 letters)



>mm_chr2_159664009_159664743
          Length = 735

 Score =  648 bits (335), Expect = 0.0
 Identities = 335/335 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctccattaatgtgctaaggaatctcgggaaaattaccctttcttctgtcatcttctcaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctccattaatgtgctaaggaatctcgggaaaattaccctttcttctgtcatcttctcaat 260

                                                                       
Query: 61  tttaatatagtctcaagcttagtcagatctaccttcttggtttgtattgctttgaaaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttaatatagtctcaagcttagtcagatctaccttcttggtttgtattgctttgaaaaat 320

                                                                       
Query: 121 tagaaaacccgttctcatggacttgtaattgaagccactttctgtctttatgccacaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagaaaacccgttctcatggacttgtaattgaagccactttctgtctttatgccacaaaa 380

                                                                       
Query: 181 gcttaggggcttgaatgtaaatttggggttactaatatctagaagagggttttctaggta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcttaggggcttgaatgtaaatttggggttactaatatctagaagagggttttctaggta 440

                                                                       
Query: 241 aagggggaggggcagagcaatgagcccaaagagtttaagtatggacagaacagagaatgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagggggaggggcagagcaatgagcccaaagagtttaagtatggacagaacagagaatgt 500

                                              
Query: 301 acttgattggcacacaaagaacagagtgaacattg 335
           |||||||||||||||||||||||||||||||||||
Sbjct: 501 acttgattggcacacaaagaacagagtgaacattg 535


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 335
Length of database: 735
Length adjustment: 9
Effective length of query: 326
Effective length of database: 726
Effective search space:   236676
Effective search space used:   236676
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no455_o11.g1 MSMg01no455_o11.g1 CHROMAT_FILE:
MSMg01no455_o11.g1 PHD_FILE: MSMg01no455_o11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:32 2005
         (240 letters)



>mm_chr2_159748621_159749260
          Length = 640

 Score =  441 bits (228), Expect = e-128
 Identities = 237/240 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccagtgaaagtgtcagccaaaatacacccttcatcttttaagttactcttctctggtgtt 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 ccagtgaaagcgtcagccaaaatacacccttcatcttttaagttactcttctctggtgtt 459

                                                                       
Query: 61  ttgtcataacgatagaagcctaaagttttctactttaaggtcttccttcatatatgctgg 120
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 ttgtcataacgatagaaacctaaagttttctactttaaggtcttccttcatatatgctgg 399

                                                                       
Query: 121 gctctctacctgctgtcagagaaagcttgcctgggtttctgtccctgctgtctaagagta 180
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 398 gctctctacctgctgtcagagaaagcttgcctgggcttctgtccctgctgtctaagagta 339

                                                                       
Query: 181 tatgatgtctgctgagaatgtctccatctccaaaattgaattcctggatagaggacatga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 tatgatgtctgctgagaatgtctccatctccaaaattgaattcctggatagaggacatga 279


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)