Query= MSMg01no455_o22.b1 MSMg01no455_o22.b1 CHROMAT_FILE:
MSMg01no455_o22.b1 PHD_FILE: MSMg01no455_o22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:34 2005
(480 letters)
>mm_chr2_95438314_95439193
Length = 880
Score = 899 bits (465), Expect = 0.0
Identities = 475/481 (98%), Gaps = 5/481 (1%)
Strand = Plus / Minus
Query: 5 gaattcttccataccggaagaattcaagtgtgttgtttgagacaaggttccccaatgaaa 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 gaattcttccatacaggaagaattcaagtgtgttgtttgagacaaggttccccaatgaaa 722
Query: 65 aggactgaaaac-----aaacaaaacaaaacaaaacaaaacggacaggaaggcttcagaa 119
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 aggactgaaaacaaacaaaacaaaacaaaacaaaacaaaacggacaggaaggcttcagaa 662
Query: 120 gagaacactactgaagtgatgcagacagcagacaatgaatttactcagagcaaacaatct 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 gagaacactactgaagtgatgcagacagcagacaatgaatttactcagagcaaacaatct 602
Query: 180 ttccaaaacattttagctcgaacatttaaaccctactgaatcctgtctacattggaatgc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttccaaaacattttagctcgaacatttaaaccctactgaatcctgtctacattggaatgc 542
Query: 240 aggcctgtggctgaatccgaactttatcactttaggatgaatacatggaattggaagctt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aggcctgtggctgaatccgaactttatcactttaggatgaatacatggaattggaagctt 482
Query: 300 atacattagtagatttggaagaaatgaaatgaggaataatgacaagtgatctctgttttt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 atacattagtagatttggaagaaatgaaatgaggaataatgacaagtgatctctgttttt 422
Query: 360 ctaacgtaataagaagggaaatcgagttaagaaaaagagagtaggatgtctttgaaagct 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ctaacgtaataagaagggaaatcgagttaagaaaaagagagtaggatgtctttgaaagct 362
Query: 420 tcagcaaaggagaaagttccagaagatatatgaaaaataatttattggatggtagaccta 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tcagcaaaggagaaagttccagaagatatatgaaaaataatttattggatggtagaccta 302
Query: 480 t 480
|
Sbjct: 301 t 301
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space: 408900
Effective search space used: 408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no455_o22.g1 MSMg01no455_o22.g1 CHROMAT_FILE:
MSMg01no455_o22.g1 PHD_FILE: MSMg01no455_o22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:35 2005
(504 letters)
>mm_chr2_95292976_95293879
Length = 904
Score = 936 bits (484), Expect = 0.0
Identities = 499/504 (99%)
Strand = Plus / Plus
Query: 1 aatggatctttttctatgcatatttttgaaatattgctggtaattagtttatacatgtct 60
||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 201 aatggatctttttctatgcatatttttgaaataacgctggtaattagttcatacatgtct 260
Query: 61 gtaaatatgtttagaaaaaaatcattctttgaaaatatatttccctagggcaaaggtggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtaaatatgtttagaaaaaaatcattctttgaaaatatatttccctagggcaaaggtggg 320
Query: 121 attctagttctgaaactgtcatgtagttactgtcagcaataagtagctagaggattcttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attctagttctgaaactgtcatgtagttactgtcagcaataagtagctagaggattcttt 380
Query: 181 ttgtgattttacacctacatctgcaaagttctataaatgttcgctgggattagagtggag 240
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 381 ttgtgattttacacctacatctgcaaagttctataaatgttcactgggattagagtggag 440
Query: 241 atttgctcataaaatttacctgataaagaaatttcatgaagatctgcttgttggagacca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atttgctcataaaatttacctgataaagaaatttcatgaagatctgcttgttggagacca 500
Query: 301 caagacctcattaagctgctctatatgcaatatgttgcttaattgcttggatcaatcaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caagacctcattaagctgctctatatgcaatatgttgcttaattgcttggatcaatcaag 560
Query: 361 tgaccactgaggaacatcacgaagggataatatgagtctctggttttcagtctcacccac 420
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 561 tgaccactgaggaacatcacgaagggataatatgagtttctggttttcagtctcacccac 620
Query: 421 ctttagttagaaagattgtcctccatacaaccccaatccagatgggctgagaggcaatga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctttagttagaaagattgtcctccatacaaccccaatccagatgggctgagaggcaatga 680
Query: 481 tggaatgttcaaaagaaactacag 504
||||||||||||||||||||||||
Sbjct: 681 tggaatgttcaaaagaaactacag 704
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space: 441636
Effective search space used: 441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
