BAC Information

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BAC

Clone NameMSMg01-456A13
Chromosome2 (Build37)
Map Location 56,137,151 - 56,137,493
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666936, Kcnj3
Downstream geneLOC227920, Nr4a2, LOC100041900, LOC100042910, Gpd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456A13.T7 (MSMg01no456_a13.b1)MSMg01-456A13.TJ (MSMg01no456_a13.g1)
ACCAG542431AG542432
length738763
length of high quality
(start - end)		499 (68 - 566)446 (79 - 524)
definitionCHROMAT_FILE: MSMg01no456_a13.b1 PHD_FILE: MSMg01no456_a13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:42 2005CHROMAT_FILE: MSMg01no456_a13.g1 PHD_FILE: MSMg01no456_a13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAATTTACGAATCTCAAATGGCTGAGAGGCACTTAAAGAAATGTTC
TAAGTCCTTAGTCATCAGGGAAATGCAAATCAAAATGACCCTGAGATTCC
ATCTGACATCAATCAGAATAGGTAAGATTGAAACCTCAGGTGACAGCACA
TGCAGGTGAGGATGTGGAGAAAGAGGAACATTCCTCCTACACTGCTGATG
GGATTGCAAACTGGTACAACCTCTCTGGAAATCAATGTGGAGGTTCCTCA
GATTTTGAAAAAGGATCTACCTGAAAACCCAGCTATACCACTCTTGGGCA
TATACCCAAAAGATGCCCCACCAGGCCACAGGGCCATATGTTCCACTATG
TTCACAGTGGCCTTATTTGTGATAACCAGAAATGAGAAACAACTTAGAAG
TCCCTCAACACAAGAATGCATACAGAAAATATGGTACATTTACACAATGG
AGTACTACTCAGTTATTAAAAACAAGGACTTCATGAATTTGGCAGGTAAA
TGGATAGAACTAGAANACATCATCCTAAGTGAGGTAACCCAGAAACAAAA
GACACAAATGGTATGTACTCACTTATAAGTGGCTATTAACCAAAAGCTCT
GAATGGCCATGATGCCACCCACAAACCTATGGAGCTTAATTAAAAGGAGA
CCCAAGGGCAGAAGGGTTTCGCCAACCTAAAAAGAAAG

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTACATCTCCAACAAAAAATTA
GCTGTTATACTGATGGGTCTGATTTTATATTGACTTTGTCATTCTCTATT
ATTGCATTTTATATTCTTTCATATCCATTCACACTTAGTGTTTTACTTAT
CATTTATATGAGTGATTTATTTTCATTTCTATTTAATATTTTATATGTAT
ATTGCAATTGGGTGGTATCTCCTTAGATTTGGACTTCTTTTCTAATTTCA
TTGATAATATTTTCTGTGCCTTTGTCTTGTATTTCTTTCCCTTTGTCCAC
AATTCATAGACTTGAACTTTTCACATCATCCAAAGGATCATACATTTTCT
GTTCATGCTTTTTCTCAAAATAGTATTATAATCTTTTGCTGAGTAACACA
CTCTACCTTGTCAACAAGCCCTGTTTTCTACTTGATCCATTCCAATGGTG
AAGCTTTTAACCGAACTTTTTATTAGAATAACTGACATTTTTATTTCATG
GAATATTTTGGATTGAGGTTTCTTCACTGGTTCCGGCTTCTTACTGAATT
GGATTGTAAAATATAATTATATAGAAGGGGGAGCCAATCCGCTCCCCTTT
TTTTTTTTCTTGGAACGGAATATCGTTTTTTAGAACATGGTTCCCCTTCT
TTTGATTCTCCTCCTTTCCTCTTTTTCTTTTGTTTGCCCTCCTGTTTTTT
TTTGTTCACTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_a13.g1 MSMg01no456_a13.g1 CHROMAT_FILE:
MSMg01no456_a13.g1 PHD_FILE: MSMg01no456_a13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:42 2005
         (446 letters)



>mm_chr2_56136648_56137493
          Length = 846

 Score =  632 bits (327), Expect = 0.0
 Identities = 341/349 (97%), Gaps = 6/349 (1%)
 Strand = Plus / Minus

                                                                       
Query: 98  cattcacacttagtgttttacttatcatttatatgagtgatttattttcatttctattta 157
           |||||||||||||||      |||||||||||||||||||||||||||||||||||||||
Sbjct: 846 cattcacacttagtg------ttatcatttatatgagtgatttattttcatttctattta 793

                                                                       
Query: 158 atattttatatgtatattgcaattgggtggtatctccttagatttggacttcttttctaa 217
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 792 atattttatatgtatattgcaattgggtggtatctccttagatttgggcttcttttctaa 733

                                                                       
Query: 218 tttcattgataatattttctgtgcctttgtcttgtatttctttccctttgtccacaattc 277
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 732 tttcattgataatattttctgtgcctttgacttgtatttctttccctttgtccacaattc 673

                                                                       
Query: 278 atagacttgaacttttcacatcatccaaaggatcatacattttctgttcatgctttttct 337
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 atagacttgaacttttcacatcatccaaaggatcatacattttctgttcatgctttttct 613

                                                                       
Query: 338 caaaatagtattataatcttttgctgagtaacacactctaccttgtcaacaagccctgtt 397
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 caaaatagtattataatcttttgctgagtaacacactctaccttgtcaacaagccctgtt 553

                                                            
Query: 398 ttctacttgatccattccaatggtgaagcttttaaccgaactttttatt 446
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 ttctacttgatccattccaatggtgaagcttttaaccgaactttttatt 504


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 846
Length adjustment: 10
Effective length of query: 436
Effective length of database: 836
Effective search space:   364496
Effective search space used:   364496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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