BAC Information

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BAC

Clone NameMSMg01-456A14
Chromosome2 (Build37)
Map Location 147,418,626 - 147,589,752
singlet/doubletdoublet
Overlap geneLOC640914, A530006G24Rik
Upstream geneLOC668918, Gm114, Xrn2, Nkx2-4, Nkx2-2, LOC100043816, LOC668919, LOC668920, Pax1
Downstream geneLOC100043820, Foxa2, LOC383752, Sstr4, Thbd, Cd93, Nxt1, Gzf1, Napb, Cstl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456A14.T7 (MSMg01no456_a14.b1)MSMg01-456A14.TJ (MSMg01no456_a14.g1)
ACCAG542433AG542434
length744772
length of high quality
(start - end)
276 (67 - 342)189 (126 - 314)
definitionCHROMAT_FILE: MSMg01no456_a14.b1 PHD_FILE: MSMg01no456_a14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:42 2005CHROMAT_FILE: MSMg01no456_a14.g1 PHD_FILE: MSMg01no456_a14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(147,418,626 - 147,418,901)(147,589,564 - 147,589,752)
sequence
TAXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCAAGAGGATCCGCGGAA
TTCCATTTTGCCTTCAAGATGACGATGGAGAAACAGTGGCAAATGCTTCT
CCTGAGTAGACAATTGAAATGTTATTCACTGAGATGCCTTCAACCATCTG
TAAACCTCCTGCCTACACAAATCACTTCTTCAGATTTTCCAGTACCAGAT
AGTCTGCCTTCCTGTTACTTGGTGAGTTGTGGTTTAGGTACTCTGAGAAC
TGCTTAGCCTGGAATGGAAATTAATCACAGGTCAAGGTCATAGTGTTGTT
GCCAGAATTAATAACCAAATTGGTGCTGATATCACCAGGCAGGGTAGGCA
CTGGCAATAAATTTTGTAAATAGAAGTTCTAGGGAAAAGCACACAAATCA
CTAGTTCCAGCCCACGAGTTTCCCACAAATTGAGTAGTCTTGGATGACAA
ACACCCAATCAAGGATCAAGACATTGGCCAGTGGATTCGCCCGACACCCG
CAAGGGCCCACACAGGATTCCCCACGGGATCCTAAGATCTCTGGTGATTG
GAACACAGTGTATGTCCCAAACCAACTGCATGGTAACCTGATATTGCGCT
ATAAATTTCCATCACATTATTCTGTTCTGAATCTGTTTAAAAGCCCGCCC
CTGCTCCACTCTAGTCCCCGGTTTACCTTGCCTAGTGATAGTTTCTCCCT
CTCTTCTTTTAACGTTCTCTTTTTATTATTTCCCCACGTTTTTC
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTTCCAGAAATTCTCTTGGGGATTTAAAAAATATCTACAC
AGGCCAAGAAACCCTATGAATCCGCTCACATCCAATACACTAAAACTCCA
GCTCAACTGTATTTAGGGTAGCACATAGAAGCCAGGGATATGGGCACTCA
GCCTCATTAATAAGCCTCATTATTAAGTTCTTAGATAAACTCTCTTCAGT
ATTATAAAGAGGCACCAAAGAAGATATCAAAAAAGGCATACAGGAAGCAT
CCCTTTCAAAGGACCATCCCTCATTGTAAGTCACTCTGAGGGACTAGACT
TGGCCAATCAGTGCTGCACAAGAAGGGTTATGTGGGGGCGATCAGGCACT
TACCTTTCAGGGGAACACCGCCTGAAAGAAATGGAGCAGGATCCTGGGAA
CACGACACAAAGCGTGCCCATACCCAAATGTAAAGCTTGCTTTCAAAATC
AGGTGAGTCATACAGAGTGATGTGCTTAAGAATCCCATATGACCGTTGCT
CTCTTAGGTTTTGTGCATCCTGCGCTCGGAATTGGCTTCTTGCTGCTCTT
ATTGGACGGGTTTGTTTTCTTGCATAATATATTGCCCCGCCTTGCTTGTT
TTTTTTTTTTTTTTGCCTCTTATTCATTTTGCTCGCCCTTGTTTTTCTCA
TTTTTCCCTTTCTCTGCCCCTCTTTTCCCTCTCCCTTCTTCCTTTTCCTC
GCCTATATTTCTTCTGCCGTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_a14.b1 MSMg01no456_a14.b1 CHROMAT_FILE:
MSMg01no456_a14.b1 PHD_FILE: MSMg01no456_a14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:42 2005
         (276 letters)



>mm_chr2_147418426_147419101
          Length = 676

 Score =  526 bits (272), Expect = e-154
 Identities = 275/276 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agatgacgatggagaaacagtggcaaatgcttctcctgagtagacaattgaaatgttatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agatgacgatggagaaacagtggcaaatgcttctcctgagtagacaattgaaatgttatt 260

                                                                       
Query: 61  cactgagatgccttcaaccatctgtaaacctcctgcctacacaaatcacttcttcagatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cactgagatgccttcaaccatctgtaaacctcctgcctacacaaatcacttcttcagatt 320

                                                                       
Query: 121 ttccagtaccagatagtctgccttcctgttacttggtgagttgtggtttaggtactctga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttccagtaccagatagtctgccttcctgttacttggtgagttgtggtttaggtactctga 380

                                                                       
Query: 181 gaactgcttagcctggaatggaaattaatcacaggtcaaggtcatagtgttgttgccaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaactgcttagcctggaatggaaattaatcacaggtcaaggtcatagtgttgttgccaga 440

                                               
Query: 241 attaataaccaaattggtgctgatatcaccaggcag 276
           ||||| ||||||||||||||||||||||||||||||
Sbjct: 441 attaaaaaccaaattggtgctgatatcaccaggcag 476


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 276
Length of database: 676
Length adjustment: 9
Effective length of query: 267
Effective length of database: 667
Effective search space:   178089
Effective search space used:   178089
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no456_a14.g1 MSMg01no456_a14.g1 CHROMAT_FILE:
MSMg01no456_a14.g1 PHD_FILE: MSMg01no456_a14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:43 2005
         (189 letters)



>mm_chr2_147589364_147589952
          Length = 589

 Score =  350 bits (181), Expect = e-101
 Identities = 187/189 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcacatccaatacactaaaactccagctcaactgtatttagggtagcacatagaagccag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tcacatccaatacactaaaactccagctcaactgtatttagggtagcacatagaagccag 330

                                                                       
Query: 61  ggatatgggcactcagcctcattaataagcctcattattaagttcttagataaactctct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ggatatgggcactcagcctcattaataagcctcattattaagttcttagataaactctct 270

                                                                       
Query: 121 tcagtattataaagaggcaccaaagaagatatcaaaaaaggcatacaggaagcatccctt 180
           ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tcagtagcataaagaggcaccaaagaagatatcaaaaaaggcatacaggaagcatccctt 210

                    
Query: 181 tcaaaggac 189
           |||||||||
Sbjct: 209 tcaaaggac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 189
Length of database: 589
Length adjustment: 8
Effective length of query: 181
Effective length of database: 581
Effective search space:   105161
Effective search space used:   105161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)