BAC Information

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BAC

Clone NameMSMg01-456A24
Chromosome2 (Build37)
Map Location 80,486,223 - 80,486,462
singlet/doubletsinglet
Overlap geneNup35
Upstream geneSsfa2, Ppp1r1c, Pde1a, LOC668005, Prdx6-rs1, Dnajc10, Frzb, Nckap1, LOC624223, Dusp19, LOC672381
Downstream geneLOC103324, LOC668027, LOC100040624, LOC100040655, LOC100040704
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456A24.T7 (MSMg01no456_a24.b1)MSMg01-456A24.TJ (MSMg01no456_a24.g1)
ACCAG542453AG542454
length738768
length of high quality
(start - end)
396 (78 - 473)240 (83 - 322)
definitionCHROMAT_FILE: MSMg01no456_a24.b1 PHD_FILE: MSMg01no456_a24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:45 2005CHROMAT_FILE: MSMg01no456_a24.g1 PHD_FILE: MSMg01no456_a24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTCCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTGTCTTTCCTGAAAATCAAATATATTGAAAATCAACTTTG
TGGACTGAACAACTACTGGATTTATGGACTTCCCATTGGGAGACAGCCAT
TGTTGGAATAGTTAGGACCATCACATGTAAGCCACTCTGCTAAATCTTGT
ATGTATATACATATAATATGTACTCTATAACACATAATATATAACATATG
TACTATTGATCACATATAACATATAACAAATGATATATAATATGCAATAT
AGTAGAATATATAAAATAGAATAAATAATATGTGTTATATAATATATGGT
ATATGATATGTGACATTACGACATATGACATATGTTAATATAATATATAA
TATAGTATATGACAAACCTGTGATATGTAATATATGATATATAATGTATG
ATATGTGATATATAATATTTATGTCTCTCTCCTCTCTTTCTTTCCCTTTT
TTCCCTTATTTTCCCCCTTTTTTTTTTTCTCCCCCTACTACTTTTTTTTA
TTTTTTTCTTCTCCTCTTCTTTTTTTTCTTTTATCTCTCTCCTTTCTCCT
CCCACTTCTTTTTTTTCTATTTTTTCCTCTTTTTCTCTTCCTTCTTTCTT
TTTTTTTTTCTCCCTTTTTTCTACAACCATATTTTATTATATACAGTTAT
AACTACCATTCTTACTTTTTACTATCCGCCATTTTCCT
NNNAAATCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTAATGTATTAATTAA
TAGAGGTGTTTCTATCAGCTCACACTTGCAAAGGTGGAGTCTCACTTTTC
ATCTTCTGTCCTGACCAGCATTAACTCAAAATCTGGCAAGATCACATTTC
CTTTGGCTCCTTTAGTGTATAGTTTACAGTAGGAAGCATGAGGCTGGTGA
CATGGCTCAGGGCTAAGTGCTCTTGCTGCCAAGCTTACTGCCTGAGCTCA
GTCCTCAGCTCCACATGGTGGGAAAGAGGGCTCTACTCCCTGCAGGGCTA
AGCCTAATGGGCCTCCTAACGGGGGGATCTCCCTTTCCCCCCCCCTTTTT
CCCCCCCCCCCCCATTATAAAAGGAAAAAAAACCCCCTCTTTTTTTTTTT
GGGGGGGGGGGGTTCTTCTCTTTTTTGTGGGTGCGAACAAAAAAAAAAAA
AAAATTTTTTTTTGTTGTGGGTGGCTTTAATAACTATATACCTTTCATTT
TCTTACCCCCCTTCTTTCCCTTTTTTTTTTTTTGGTGNNNGTTTTTTGGG
GGGGTGTGTGCTTTTTTTGCTGCCGCGGGGGGCCCCCCCTTTCTATCCAT
ACTTCTAAATATTTTTATCNCTATAAAAATCAGAAATATTTTTTTTTTCT
TTTTCCTCCTCTCTTCCCCGCTCGCCCGCCAAAATATTCAATAAAAAACA
TATAATATTTTTTTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_a24.g1 MSMg01no456_a24.g1 CHROMAT_FILE:
MSMg01no456_a24.g1 PHD_FILE: MSMg01no456_a24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:45 2005
         (240 letters)



>mm_chr2_80486106_80486745
          Length = 640

 Score =  449 bits (232), Expect = e-131
 Identities = 238/240 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctttaatgtattaattaatagaggtgtttctatcagctcacacttgcaaaggtggagtct 60
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 ctttaatatattaattaatagaggtgtttctatcagctcacacttgcaaaggtggagtct 298

                                                                       
Query: 61  cacttttcatcttctgtcctgaccagcattaactcaaaatctggcaagatcacatttcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 cacttttcatcttctgtcctgaccagcattaactcaaaatctggcaagatcacatttcct 238

                                                                       
Query: 121 ttggctcctttagtgtatagtttacagtaggaagcatgaggctggtgacatggctcaggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 ttggctcctttagtgtatagtttacagtaggaagcatgaggctggtgacatggctcaggg 178

                                                                       
Query: 181 ctaagtgctcttgctgccaagcttactgcctgagctcagtcctcagctccacatggtggg 240
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 177 ctaagtgctcttgctgccaagcttactgcctgagctcagtccccagctccacatggtggg 118


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)