BAC Information

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BAC

Clone NameMSMg01-456B14
Chromosome2 (Build37)
Map Location 27,568,705 - 27,569,180
singlet/doubletsinglet
Overlap geneRxra
Upstream geneLOC669582, Abo, Surf6, Surf5-ps, Surf5, Rpl7a, Surf1, Surf2, Surf4, Gm711, Rexo4, Adamts13, 5930434B04Rik, Slc2a6, LOC665315, 1110002H13Rik, Adamtsl2, C630035N08Rik, Dbh, Sardh, Vav2, D2Bwg1423e, Brd3, Wdr5
Downstream geneCol5a1, Fcnb, Olfm1, Gm347, 1700007K13Rik, Mrps2, LOC665412, Gbgt1, Ralgds, Cel, Gtf3c5, Gfi1b, Tsc1, 1700026L06Rik, 1190002A17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456B14.T7 (MSMg01no456_b14.b1)MSMg01-456B14.TJ (MSMg01no456_b14.g1)
ACCAG542481AG542482
length755760
length of high quality
(start - end)
476 (68 - 543)154 (81 - 234)
definitionCHROMAT_FILE: MSMg01no456_b14.b1 PHD_FILE: MSMg01no456_b14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:48 2005CHROMAT_FILE: MSMg01no456_b14.g1 PHD_FILE: MSMg01no456_b14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXATTTCATAGAGGATCCGCGGA
ATTCTACATTCTCGAGGCCCCAACAATAGGGGCAGGGCCCCACCAACAAC
TGATACCATGTGGTAGCCAACCTCGCCCATGTTCCGTTTTCAACTCCAGA
ACAGATATGCCACCCTGATAATCTGACAGGTTTCCAGCCTAGCCATGTTC
TGATAGCCTGAGTTAGAGGTGATGTCTCTCCTACTGTCAAACCCCCAACC
CAGATGACAACAGAACTCTGTAATGGAGCACCCAGAGCCACCATGTCCAC
ACTGCCACCCGCCCTGTCTCTGAGGCCCAAATGTGGCTATGCCTATGGCC
CAGTGACAGCATGCTACAGTCCCTGGCCCAGGCCCTGCATCACAACAGGT
TCTACATGCAAGCACTTCTGTCCAGGTGTCCCCCATCCCAGTATCCAACA
AACACAAGGATAATTCTCCGGAGATAATAAGGTAATCAACTCCTCTCGGC
TCCCTGAGGGCCTCTGTACAGCCAGGCTATTAATACCAAGAGATACAGAC
TTCTCACACAAGGACTATGATCAGCCCCCTATCACATGTGGATCTGGAAG
CATGGCAGAAAATCTGTGAAACCTCTTATCTTGCCCTATGGAAATGGAAG
TGCCCCCCACTACATAAAGAGGGAACCGAAGGGTCTAACTTTTTATAAAC
AAAAGCTTTTTCACTTTGAGCATCCCAAACAGTGAATTTCTCACCTTGCA
ACTCT
CGGGGAAACACCGATGATAGGGGAGGCTGGCGGCGCCTGGTTTCAAAAGG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXGCTGAGCCTCCTGAATGCTGTG
AGGCAGATTGGCTAATGTTGATATTCTTTCTTTCTTTCTTTCTTTCTTTC
TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT
TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC
TTTCTTTCTTTCCTTTTTTTCCCCGGTTTTGGTTTTGGGTTTTTGGGTGG
GGGGGTTGGGGGCCAAAAACCCTAAAATTTTTTCTTCCCAAAAAAGGGGG
GAATAAAAGGGGGGGGGGGGGTAAAAAAAAAGGGGGCTTAGAAAGGGAAA
AAAAATGGGCTCTCCGGGAAAAGAAACCGGCTTTTTAAAATAAAAACGCC
AATGGGGTTTAAGTCCTGGGGAGGGGGGGGATAGGACTATTAGGTTTAAG
AATAAAATATAATTCCTTTGTGGGGGGGGGGGGGGAGATCGTGTTTGAGA
TATGGACGGTTAAAAAGAAAAAAGACGAGTATTTAACAAATAGAAAATCT
CTTCTTATTAGAGAGAAAGAAAATATAAATTACTTATGATAATAAGGGGG
GGGTGGTGGTGTAATTAATATCTATTGGAGTTATGAAACAGTATTATAAT
ATAAGCGGTTGGGGGTATGATCGATATTTATTTTGTCTTAGTGACGTGTT
GCGTTTTTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_b14.b1 MSMg01no456_b14.b1 CHROMAT_FILE:
MSMg01no456_b14.b1 PHD_FILE: MSMg01no456_b14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:48 2005
         (476 letters)



>mm_chr2_27568505_27569380
          Length = 876

 Score =  874 bits (452), Expect = 0.0
 Identities = 470/476 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccccaacaataggggcagggccccaccaacaactgataccatgtggtagccaacctcgcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 ccccaacaataggggcagggccccaccaacaactgataccatgtggtagccaacctcgcc 617

                                                                       
Query: 61  catgttccgttttcaactccagaacagatatgccaccctgataatctgacaggtttccag 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 616 catgttccgttttcaactccagaacagatatcccaccctgataatctgacaggtttccag 557

                                                                       
Query: 121 cctagccatgttctgatagcctgagttagaggtgatgtctctcctactgtcaaaccccca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 cctagccatgttctgatagcctgagttagaggtgatgtctctcctactgtcaaaccccca 497

                                                                       
Query: 181 acccagatgacaacagaactctgtaatggagcacccagagccaccatgtccacactgcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 acccagatgacaacagaactctgtaatggagcacccagagccaccatgtccacactgcca 437

                                                                       
Query: 241 cccgccctgtctctgaggcccaaatgtggctatgcctatggcccagtgacagcatgctac 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 436 cccgcccagtctctgaggcccaaatgtggctatgcctatggcccagtgacagcatgccac 377

                                                                       
Query: 301 agtccctggcccaggccctgcatcacaacaggttctacatgcaagcacttctgtccaggt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 agtccctggcccaggccctgcatcacaacaggttctacatgcaagcacttctgtccaggt 317

                                                                       
Query: 361 gtcccccatcccagtatccaacaaacacaaggataattctccggagataataaggtaatc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 316 gtcccccatcccagtatccaacaaacacaaggataattctccggagataatgaggtaatc 257

                                                                   
Query: 421 aactcctctcggctccctgagggcctctgtacagccaggctattaataccaagaga 476
           ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct: 256 aactcctctcggctccctgagggcctctgcacagccaggctataaataccaagaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space:   403556
Effective search space used:   403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)