BAC Information

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BAC

Clone NameMSMg01-456B18
Chromosome2 (Build37)
Map Location 64,952,389 - 64,952,806
singlet/doubletsinglet
Overlap geneCobll1
Upstream geneLOC620544, LOC667291, Grb14
Downstream geneLOC383705, 9330158F14Rik, Scn3a, Scn2a1, A330102K23Rik, Galnt3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456B18.T7 (MSMg01no456_b18.b1)MSMg01-456B18.TJ (MSMg01no456_b18.g1)
ACCAG542489AG542490
length757772
length of high quality
(start - end)
498 (45 - 542)418 (77 - 494)
definitionCHROMAT_FILE: MSMg01no456_b18.b1 PHD_FILE: MSMg01no456_b18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:49 2005CHROMAT_FILE: MSMg01no456_b18.g1 PHD_FILE: MSMg01no456_b18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:27:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTAGTTATTCTTCTGTCTCTACCTCTCCAGCACTAGGACTGTAAACA
GACAGCACTGTCTCTGGCCTGACTGCCCCTGTCTCTGTCTTTCTCTGCTT
TCCCCCTCTCTGTGTCTGCCATCCTCTTTTCTTTCTATCTCACCTCTCCC
TCCTTCCTTTCTTCCTTTCTTCTTTCTTTCTTCCTTCCTTTCTTTCTTTC
TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTCCTTCCTTCCTT
CCTTCCTTTGTTTCTTCCTTTCTTTTCTTCCTTTCTTTCTTTCTTTCTTT
CTTTCTTTCTTTCTTTCTTTCTTTCTTCCTTCCTTCCTTCCTTTGTTTCT
TCCTTTCTTTTCTTCCTTCCTTCCTTTCTTTCTTTCTTTCTTTCTTTCTT
TCTTTCTTTCTTTCTTTCTTTCTATCTTTCCTTCTTCCTTTCTTCCTTTC
TCTCCTTCTTTTCTTTCTTCCTTTTCTTTNCACAGCATCTTTATAAGTAG
CCCACGCTAAATTTAAAACCTTGTCTCTCCCACCTCAATCGCCCAAACAA
TTGAATTTTTGAATCTTATGTACCCCAGAACCCGATTCCATTTCATTTTT
TTCTAGGTACTTAGATTACCCTTAATACCCAAAAATAAACTATAAATAAT
TTTTGCGTTGGAAACCCCTATAAAACTAATTTTAAAAAATGTACTCTTCT
TTTTTAA
NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGATAAAGCCCTAGTGGCATG
CCACTCCAAAGCTATTGTAAGACTACAGTAGATGATCAATATGTAAATGC
AGAGACACTGGAAGCAACCGAAACTCTGATCTGCCTCCTAGCTCCCTGCT
TCAAGAATTCTGATTGATTGCTTTCATGAGATATATAATAAAATTCTTCC
ATCTCCGTGCTGCACACCCTAACACTCACTGACAGGTCTGTTCTTTCACC
TGATAAAAGCAGTCATGGCATGATTTCTCAGGCACAAGTATGTGGTTGTG
GTACAGGAGTGTCATAAAGAAGCTGGTACAGAAATGGAAAGGGAAGGGAG
GTTTAGCTCAAAGACAGAACACCCACAGATTATCAGTCTGGGGGATCTTA
GAAACAAGCTTGTGTTTTTTAATGTGATATTTACATTTCTAGGGATAAGG
AATTTAAACATATCAAAATGAGATGAACTGCAATTTTATAAATGTTCTCT
CTCTCTCTCTCTCTCTTTCTTTCTCTATCTATTTCTCCGGGAGAGAGTGT
CGCCGTTCTATCCCTCTTTCTTTCCTTTCTTATTTCACCACTCTTCTTTA
CTATTTTATTTTTTCATTCTTTATTTCTCCGCTATTTCTTTTCCCACTTT
CCTTTCCTACTTTCATTTTTCCCATTCTTTTTACTTCCTTTTTTTTCTCC
TTCTTCAATTTCCCATTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_b18.g1 MSMg01no456_b18.g1 CHROMAT_FILE:
MSMg01no456_b18.g1 PHD_FILE: MSMg01no456_b18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:27:49 2005
         (418 letters)



>mm_chr2_64952189_64953006
          Length = 818

 Score =  785 bits (406), Expect = 0.0
 Identities = 415/418 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttcgataaagccctagtggcatgccactccaaagctattgtaagactacagtagatgat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttcgataaagccctagtggcatgccactccaaagctattgtaagactacagtagatgat 260

                                                                       
Query: 61  caatatgtaaatgcagagacactggaagcaaccgaaactctgatctgcctcctagctccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caatatgtaaatgcagagacactggaagcaaccgaaactctgatctgcctcctagctccc 320

                                                                       
Query: 121 tgcttcaagaattctgattgattgctttcatgagatatataataaaattcttccatctcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgcttcaagaattctgattgattgctttcatgagatatataataaaattcttccatctcc 380

                                                                       
Query: 181 gtgctgcacaccctaacactcactgacaggtctgttctttcacctgataaaagcagtcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgctgcacaccctaacactcactgacaggtctgttctttcacctgataaaagcagtcat 440

                                                                       
Query: 241 ggcatgatttctcaggcacaagtatgtggttgtggtacaggagtgtcataaagaagctgg 300
           |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggcatgaagtctcaggcacaagtatgtggttgtggtacaggagtgtcataaagaagctgg 500

                                                                       
Query: 301 tacagaaatggaaagggaagggaggtttagctcaaagacagaacacccacagattatcag 360
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 501 tacagaaatggaaagggaagggaggtttagctcaaagacagaagacccacagattatcag 560

                                                                     
Query: 361 tctgggggatcttagaaacaagcttgtgttttttaatgtgatatttacatttctaggg 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctgggggatcttagaaacaagcttgtgttttttaatgtgatatttacatttctaggg 618


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 818
Length adjustment: 9
Effective length of query: 409
Effective length of database: 809
Effective search space:   330881
Effective search space used:   330881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)