BAC Information

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BAC

Clone NameMSMg01-456F17
Chromosome2 (Build37)
Map Location 114,760,862 - 114,761,104
singlet/doubletsinglet
Overlap geneLOC100043222
Upstream geneGja9, A530058N18Rik, Actc1, Aqr, Zfp770, Atpbd4, LOC100043219
Downstream geneLOC100043232, LOC100043236, BC052040, Mrg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456F17.T7 (MSMg01no456_f17.b1)MSMg01-456F17.TJ (MSMg01no456_f17.g1)
ACCAG542679AG542680
length757796
length of high quality
(start - end)
244 (68 - 311)243 (75 - 317)
definitionCHROMAT_FILE: MSMg01no456_f17.b1 PHD_FILE: MSMg01no456_f17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:09 2005CHROMAT_FILE: MSMg01no456_f17.g1 PHD_FILE: MSMg01no456_f17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TAATXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAAGAGGATCCGCGGA
ATTCGTGTATACTCTTCACTATAGTTTTGTCTCCCTCAGTTTATTAGAGA
GGCTGTATTCCCATTTGGTTTATTTTGAAGCAGGAGTAAACTGTCCTTAG
TGCTAAGGGCACCTGGTCTTCTTTGGAAGCATGGGAGTTTAATTGGAAAT
GCTGGTGTCTATTTTCCTAGTCATAAACTAGGTAATTGTTTCCTAATGCA
ACCTGGCAGTGCCACTGAGGGCAGATTATACAGACCTGCCATCCAGAGTT
CTAAACAAGCTATTTAATCATTAACAGCAAGTCTCTGGATCTTCAGGACT
GAGCTGTGTGGCTGCGACTGGAGGGGAATAAGACCAGAGGGAAGCAAGGG
AGATCTGAGAAGGGCAGAAGATGCTGCACTAATGACTGGCATTGTCAGCC
ACAGCAAATGCATGGGATGACTGCAGCATCTTCACTCTCACCTTCTCAGG
GGTGTTGCTATGGGTACCATCTCGGAGGTGTCATAGAAAAAAGGAGCAGG
AGGTAGGCTGATGATCAACATAAGGAAGTAAGGGATGTGCATCAGCATAA
AAGTATTGATACATCCGACCCTTACCACCGAATTATTTGTATAATTGTGG
TGGGGATCCCTTAACTATTGAGGACGGTAAACAGCCAAATTGGTTGAAAT
CGTTTTTTATTGGATATTTGATTGATTTCTGGGTTTCTTTTGTTGGCTCC
CAACTTG
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTGTTTAGCACTGTACCCTGTTATT
TAATTGGGTTATTTGGTTGTCTGGAGTCTAAGTTCTTTGTATATTTTGGA
TAATTGCCCTCTATCAGATGTAGAATTGGTAAAGATCTTTTCCCAATCGG
TAGGTTGACATTTTGTCCTATTGACGGTGTCCTTTGCCTTACAGAAGCTG
TTCAGTTTCATAATGTCCCATTTGTCAATTGTTTATTGCAGAAGCTGAAC
CATTGGTGTTCTGTTTTTTATAATTTCCCCTGTATCAATGTGTACAAGGC
TCTTTACCACTTTCTCTTCTATTAGATTCAGCATATCTGGTTTTATGTGT
AGGTCCCTGATATACCTGCACTTGATCTTTGTACATAGAGATATAAATGG
ATCCATTTGCATTCTTCTACTTGTTGCCTGGTATACCATCCCCTTTTGTT
TGAAATTGCTGTACTTTTTTCCTTTTGCACGGTTAATACCTTTCTTTATC
CCACCATTTTTTCACCTCTTTTCCTCTTCTTTGTTTAAATTTCAATTGAT
CCTATCCTGTGTTTCGTCCATCTTTGTTTTTCCTTTTTTCTCCCTCACCT
CGTTCTACCTTTTTTTTTTTTTTTTTTTCCTCTTTTGTCTTTTTTTTTTT
TTTCCTTTCCTCTATTCTATTTTCCCTCTTCCTCTTTTTTTACTTTTTTT
TTTTTCTCTCTTTCTCTTTTTACTTTCTTTCTTCTTTTTTTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_f17.b1 MSMg01no456_f17.b1 CHROMAT_FILE:
MSMg01no456_f17.b1 PHD_FILE: MSMg01no456_f17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:09 2005
         (244 letters)



>mm_chr2_114760662_114761305
          Length = 644

 Score =  455 bits (235), Expect = e-132
 Identities = 241/243 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actatagttttgtctccctcagtttattagagaggctgtattcccatttggtttattttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 actatagttttgtctccctcagtttattagagaggctgtattcccatttggtttactttg 260

                                                                       
Query: 61  aagcaggagtaaactgtccttagtgctaagggcacctggtcttctttggaagcatgggag 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagcaggagtaaactgtcctcagtgctaagggcacctggtcttctttggaagcatgggag 320

                                                                       
Query: 121 tttaattggaaatgctggtgtctattttcctagtcataaactaggtaattgtttcctaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttaattggaaatgctggtgtctattttcctagtcataaactaggtaattgtttcctaat 380

                                                                       
Query: 181 gcaacctggcagtgccactgagggcagattatacagacctgccatccagagttctaaaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcaacctggcagtgccactgagggcagattatacagacctgccatccagagttctaaaca 440

              
Query: 241 agc 243
           |||
Sbjct: 441 agc 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)