BAC Information

Click to search

BAC

Clone NameMSMg01-456I05
Chromosome2 (Build37)
Map Location 104,616,661 - 104,617,071
singlet/doubletsinglet
Overlap geneQser1
Upstream geneCaprin1, LOC433458, LOC100042961, LOC100042965, Lmo2, Fbxo3, Cd59b, Cd59a, A930018P22Rik, D430041D05Rik, LOC100043349, Hipk3, LOC383735, LOC668733, Cstf3, Tcp11l1, EG622282, OTTMUSG00000014964, Depdc7
Downstream geneLOC100042995, 2310047K21Rik, LOC668744, Prrg4, Ccdc73, Ga17, 2210415I11Rik, LOC622356, Wt1, 0610012H03Rik, Rcn1, Pax6os1, LOC100043391, Pax6, Elp4, LOC100043394
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456I05.T7 (MSMg01no456_i05.b1)MSMg01-456I05.TJ (MSMg01no456_i05.g1)
ACCAG542798AG542799
length768754
length of high quality
(start - end)
411 (73 - 483)394 (79 - 472)
definitionCHROMAT_FILE: MSMg01no456_i05.b1 PHD_FILE: MSMg01no456_i05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:21 2005CHROMAT_FILE: MSMg01no456_i05.g1 PHD_FILE: MSMg01no456_i05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCTAGTCTCCATCAATGTGCCTGGGTTGTCTGCAGCATGAATC
TAGAAGGTAACTAGTCTGACTAACTGTGTGATAGGTATTCGAATGTGCGG
ATGACCCTAGATACTCTAATCAATCTGCTGTCATCAGTGGGCCTAGTTTA
ATTAAGATCACCACCCATTTTGAGATTTAGCATGGGACAAATCTTAAGAG
GTCTCAGCCTGATGCATTTGTACATCAGAACTTCGTGGCCACCACAGCAT
CAGAGCTAGATTTGGTTTTCCACATCTCATATTCTCTGGAAAATGAATCC
ATACGGAGTTTGGTAGAGATAAAGATTGAGGTAATATCCCCTTAATAATT
GAACATAGAGTTCCAGTCTCAATCTATTTCATGACAATGCTGTGGGAGTC
ATTTGAGTTGTATATAGCACATGGACTTTATTTTGGAAGTGTTGCTCTGA
GCAAGTCTATTATTTCCTTATAAATCATAACAGTCCTTGTCTCTTTTTTA
CTTCTTCAGAACTTAAAGAATTCTATATAAATCTCCTTTAACATTTTCGG
TATTTTTTCCCTTCCAATGTTAGGTTAGCTCTTGTTTACAACTCTTGATC
CCCCTTATTATCAACTACCTATTTTCTCTTGTGGCACTTTGCGCTGCGCG
TACACCTCTTTATCCGTTATACAGCTCTTAAAGATTTCCCCCCCGTTTTT
CTTTTTTCTTTCCCCTCG
NCCCCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAATTGTGTAAACAGGCTGGCCT
CAAACTCAGACGCAACTGCTTCTGTCTCTGAAGTGCTTGCCACATGTTCA
AGGCTACATGTTCTTTTGTTGAGCTGTGTAGTTGCAGCCTTAGTCTCTAT
TGAGTCTGTGATAATTAACTACTGCTCATTCAAACAGGAGCTTCTCTGAC
CAAACCTGGTAGTAGCACTAATATTTGGGCAAAACCATAATTATTTAGAG
AGCAGTTTTGATAAGTAGATTATGCTTTTTTTAGCAAAAACAGTTGTAGC
TTCCTCACAAAGGCCTGTGACTTTACCTGTCATGTCTATGACACCATGTC
TCTGTTTTGCATATCCTAGGAAACAGGAGTTTTCCTTTGTTCCATAGTGT
GACACATAAGCCACACTATGCCTGTGCTTAATGTTACCAGAAGTGAGTTG
TAAGTAGCTATCTATTCCTTTGATGTGAGTGCTGTATTCTGATCCCCATC
CCTCCCGATTTCTTAGCTTGACCATCTTTTTATTATTACTTTCTCTTACC
TTCCCTTAATTTTGCTATTATTATTATCCCTTTCTATTTTTCTTACCGAT
TACTCTTCTTTTTACTCATATCTCTTTCTCTTTTCCTTCCTTTCCTTTTT
TATTCAACTTTTATTCTTCTTCTTTCTTTTTCTTTCTTTACTTTTTCTCT
TTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_i05.b1 MSMg01no456_i05.b1 CHROMAT_FILE:
MSMg01no456_i05.b1 PHD_FILE: MSMg01no456_i05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:21 2005
         (411 letters)



>mm_chr2_104616461_104617271
          Length = 811

 Score =  779 bits (403), Expect = 0.0
 Identities = 409/411 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtgcctgggttgtctgcagcatgaatctagaaggtaactagtctgactaactgtgtgat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 tgtgcctgggttgtctgcagcatgaatctagaaggtaactagtctgactaactgtgtgat 552

                                                                       
Query: 61  aggtattcgaatgtgcggatgaccctagatactctaatcaatctgctgtcatcagtgggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 aggtattcgaatgtgcggatgaccctagatactctaatcaatctgctgtcatcagtgggc 492

                                                                       
Query: 121 ctagtttaattaagatcaccacccattttgagatttagcatgggacaaatcttaagaggt 180
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 491 ctagtttaattaagatcaccgcccattttgagatttagcatgggacaaatcttaagaggt 432

                                                                       
Query: 181 ctcagcctgatgcatttgtacatcagaacttcgtggccaccacagcatcagagctagatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 ctcagcctgatgcatttgtacatcagaacttcgtggccaccacagcatcagagctagatt 372

                                                                       
Query: 241 tggttttccacatctcatattctctggaaaatgaatccatacggagtttggtagagataa 300
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 tggctttccacatctcatattctctggaaaatgaatccatacggagtttggtagagataa 312

                                                                       
Query: 301 agattgaggtaatatccccttaataattgaacatagagttccagtctcaatctatttcat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 agattgaggtaatatccccttaataattgaacatagagttccagtctcaatctatttcat 252

                                                              
Query: 361 gacaatgctgtgggagtcatttgagttgtatatagcacatggactttattt 411
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 gacaatgctgtgggagtcatttgagttgtatatagcacatggactttattt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 811
Length adjustment: 9
Effective length of query: 402
Effective length of database: 802
Effective search space:   322404
Effective search space used:   322404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)