BAC Information

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BAC

Clone NameMSMg01-456M08
Chromosome2 (Build37)
Map Location 167,862,868 - 167,863,022
singlet/doubletsinglet
Overlap genenone
Upstream geneAI481105, 1500012F01Rik, LOC668950, Kcnb1, Ptgis, LOC668951, B4galt5, Slc9a8, Spata2, Zfp313, Snai1, Ube2v1, AI840826, Cebpb, LOC100043728, Ptpn1, 2310033K02Rik
Downstream genePard6b, Adnp, Dpm1, Mocs3, LOC100043908, Kcng1, LOC668952, Nfatc2, Atp9a, Sall4, Zfp64, LOC100043909
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456M08.T7 (MSMg01no456_m08.b1)MSMg01-456M08.TJ (MSMg01no456_m08.g1)
ACCAG542994AG542995
length797845
length of high quality
(start - end)
239 (74 - 312)155 (80 - 234)
definitionCHROMAT_FILE: MSMg01no456_m08.b1 PHD_FILE: MSMg01no456_m08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:42 2005CHROMAT_FILE: MSMg01no456_m08.g1 PHD_FILE: MSMg01no456_m08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAAAGAGGATCCG
CGGAATTCAGATTCCCATCGTGGCAAATCTGAGACTCGTCACTGCCGTGA
TCTTTTAAATTTACATTTATGAATCTGGGGGTGTGCATTCAGTGACGTTT
GTGGTGAGGCTAGGGGACTACTTGCAGGAGTCAGCTCTCTCCTTCTCATG
TGAGTCTCAGGAAACAAACTCAGGTCATCAGGCTTACAGACACGGACACG
TTCCTTAACCCACTAAGCTGCCTCACTGCCCTCGGAGTTCTGAACAGCAA
GGTCGCAGGAACTTTTTTTCGCTAGCGGAGAGCTAGTGCGGAGCAACAGC
AGTTCTTGATAGAGAGCAGTGCAGTGCGGCTAGAATGTATTAGGAGAGAT
CGTGTTTGTTTTTTTCCCCCTCCCTCTTCCTCTCCTTCTTCCTTATTATT
TACCCACTCTTTTTTTTTTTCCGCCCGCTTTCCCCTTTTTGTTAGCTCTC
CGTGTCTCGTCTCTTTTCTTTTTTTTCTCCCTTTCTACTCCCTTTTTCTT
TCCCCTTTCCCCCCCCTTTTCATATGTGTTGCGTTTTTTATACCCACCAC
CCACCTTATTATGCTTTTTTTCTTCTCCCTATTATCTTTTCCTCTTCCCG
TTTTTTTCTTTTCATTGTTTCGCTTTTTGTCTCTCTCCTCCCCCTCGTTT
TTACTATTTTTGTCTCCTTTTCCCTTTATTTCGTATCTTATTGTTTCTCA
TCCTTTTTTATGTCCTTTGTTAATTATTTTATATTCTCCTTTTTCTT
TTCTTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCCCACCAGCAGTAGGAAC
CTCTTGGGCCATGCCTGGAGAAGGCCGCGGAAGGATGTGGCCATTGCTTT
GCTATGGAGTAGAGAGCAGAGGGCAGACAGGGAGGGTCTGACAGAGATAA
ATGACCGAGTCTCCAGATGATGCAGGAGTTTACATTCCCGCATGGATGGA
ACTCTTTTTTGCAAAATGCTATCCAGGTCTGCTGCTCTGAGATGTTGTCA
TCTGTCTCCCGCGCGGCCCTTTTATCATCTCGCATAACCGACCTATATTC
CCTCACGTCCTTTTTCTCCCCTCTCGCTCCCCTTTTCCCTCCCTCTCTTC
CCCTTTCCTTCGTTTCTTCCCCCCTTCGCCCCCCCCTTTCTCTTTTTTCT
TTCCCATTTTCGCTCTTTTACATCTTCGCCTATCCACTCCACCTTCCTCC
TTCTTTCGTCCTTTCCCCCCTCTCCTTTTTTCCTCCCCCTCTTTTTCCTT
TTTCCATTCTTCTTTCCTTTCACTCTCTCCCTTCTTTTCCTTTTATTTTT
TCCGCCCTTCCTCTCCCCTTCCTTCCCCTCTCTTTCTCCTCTCTCTTTTT
CCCCCCCCCTTTCTCCTTTCCCCTTTTCACCCCTCCCTTTTTTCCCCTCT
CTTTCCTTCCCCTCCCTTACCTCCCATTTTCTCCCCCCTCCTCCATTTCC
CTCCCTCCTCTTCTCACTCCTCTTTCCCCTTTCCTTCCCCCTTCTTCTTC
CCCTTACTTTCTTCCCTTTCCTGCCCACTTTTTTTTCTTCTCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_m08.g1 MSMg01no456_m08.g1 CHROMAT_FILE:
MSMg01no456_m08.g1 PHD_FILE: MSMg01no456_m08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:42 2005
         (155 letters)



>mm_chr2_167862668_167863222
          Length = 555

 Score =  255 bits (132), Expect = 7e-73
 Identities = 150/156 (96%), Gaps = 2/156 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcccccaccagcagtaggaacctcttgggccatgcctggagaaggccgc-ggaaggatgt 59
           ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 355 tcccccaccagcagtaggaacctcttgggccatgcctggagaaggcc-ctggaaggatgt 297

                                                                       
Query: 60  ggccattgctttgctatggagtagagagcagagggcagacagggagggtctgacagagat 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 ggccattgctttgctatggagtagagagcagagggcagacagggagggtctgacagagat 237

                                               
Query: 120 aaatgaccgagtctccagatgatgcaggagtttaca 155
           ||||||| |||||||||||||| | |||| ||||||
Sbjct: 236 aaatgactgagtctccagatgaggtaggaatttaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 155
Length of database: 555
Length adjustment: 8
Effective length of query: 147
Effective length of database: 547
Effective search space:    80409
Effective search space used:    80409
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)