BAC Information

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BAC

Clone NameMSMg01-456P02
Chromosome2 (Build37)
Map Location 98,905,407 - 98,905,629
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042886
Downstream geneLOC621386, LOC668702
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456P02.T7 (MSMg01no456_p02.b1)MSMg01-456P02.TJ (MSMg01no456_p02.g1)
ACCAG543126AG543127
length804846
length of high quality
(start - end)
225 (65 - 289)109 (75 - 183)
definitionCHROMAT_FILE: MSMg01no456_p02.b1 PHD_FILE: MSMg01no456_p02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:57 2005CHROMAT_FILE: MSMg01no456_p02.g1 PHD_FILE: MSMg01no456_p02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:28:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCTAGAGGATCCGCGGAA
TTCTACACTTTACATGGGTTAATTGTGTGGTATATAAACATAGTCTCAAT
TAACCTGTAGAAGGGTTTACTATCTGAGCAAGGAGGAAAGAATAACGGAT
TTGCTTAATAAGGTTTAAACAAAAACCTTGAGAATGGGACAGGAGTTCTC
TGGTGTGGGGAAAGGAATGGAGTAAGAAAGCATGGGGAGATATGACTGGA
AATGGAGGGCATTGGCAGGGATGATGTGGAAAGCTATTATAGTCGAAACT
CCTAGGATTTTATTATTATAGCCCTCCTGACAGATACTAGTATTAGCATA
ATGCTCCAGCTTGTTTGTTGCTACCCAGTCACGCTTCCAGTATTGATATT
TACGACACCATTTCCCCCTTATTTGTTTTTTATTTCTCTGATATCTTTCC
TATCTGACCAGATTGCTGCACCCTCGCTATATGCCGAATTCTATTGGTAC
TCCCTTCTTTGAGGTATTATGTTTAATTTGTAATTATACCTCTATTTATG
TTTTCTTTACGTTTGAATAATTACCTGTATATTTTTTTCTCGCCTTATGT
TCCTTACTCGCCCCGTTCTGTTTTTTCGTACGCACCGTTTGTTATATTTT
TTCCCTTTTCTATCTTTGTTTATGTTTTTTCCCTATATTCTCCTCTTTTT
GCATATAACTCAACCCAGCTTTTGGTTTTCTTTTCTTTCTTTTCTCTGTT
CTTTTTCCTTTTGTTCCTTGTTCTTCGCTTTGTCTCCCTCGCCTTTCATA
TTTG
ACCGATGTAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCCCCATTTTT
AATGGGGTTATTTGATTTTCTGACTTCCACCTTCTTGTGTTCTTTATATA
TGTTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCC
CAATCTGTTGGTGTTCTTTTTGTCTTATTGACGGTGTCTTTTCCTTCTGT
GTCTTATTTTTTATGGTGTTATTTTATTGTCTGAGTTCTATATTTTTGAT
TCCTTTATATTTTGTGTATTTTTGTTCCCCTTTGTTTCTTTGCTCATTAC
TCTTATATCCTTTTCCTACTTGCTGGTTGTTCTTCTTGTCTTCTATGTTT
CTGTCTTTTTTTTACACTTTACCTTTTTGCTCTTCTTATTCTTCTCATAC
TTTTATGCATTTTTCCATTTTTTCCTACCTTCTTTTCCCTTTTTTTTTTC
TACTTCCTTTTTTACCTCTTTCCCCTCTTCCTTTTTTTCACTCTTTTCCC
TTTTTCTTCTTCTTTTTCCCCTTCTTTTTTTCTCACCTCCCTTTCTTTTT
CTCCTCTTCCCCTTCTTCCCCCTTTTTTATTCTTTATACTCCTCTTTCTT
TCCCTTTATTTACTTCCCTTTTCTATTTTTTCTCCCCCCCACCTCCCTTT
CTTATTTTTCTCCTCTTCCCCTTCTCTTTCTCTTCCTCCCCCTTATTATT
CTTCTTCCCTTTATTTTTCACTCCTCTTACATTTCTTCCCCTTGTTTTAT
TTCGTCCTTTTTTTTTTTTCTCTCCTTCTATTTTACCTTTCTTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_p02.b1 MSMg01no456_p02.b1 CHROMAT_FILE:
MSMg01no456_p02.b1 PHD_FILE: MSMg01no456_p02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:28:57 2005
         (225 letters)



>mm_chr2_98905207_98905832
          Length = 626

 Score =  385 bits (199), Expect = e-111
 Identities = 217/223 (97%), Gaps = 1/223 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgggttaattgtgtggtatataaacatagtctcaattaacctgtagaagggtttactatc 60
           ||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 tgggtgaattgtgtggtctataaacatagtctcaattaacctgtagaagtgtttactatc 260

                                                                       
Query: 61  tgagcaaggaggaaagaataacggatttgcttaataaggtttaaacaaaaaccttgagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 tgagcaaggaggaaagaataacggatttgcttaataaggtttaaacaaaaaccttgaaaa 320

                                                                       
Query: 121 tggg-acaggagttctctggtgtggggaaaggaatggagtaagaaagcatggggagatat 179
           |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggggacaggaggtctctggtgtggggaaaggaatggagtaagaaagcatggggagatat 380

                                                      
Query: 180 gactggaaatggagggcattggcagggatgatgtggaaagcta 222
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gactggaaatggagggcattggcagggatgatgtggaaagcta 423


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 225
Length of database: 626
Length adjustment: 9
Effective length of query: 216
Effective length of database: 617
Effective search space:   133272
Effective search space used:   133272
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)