BAC Information

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BAC

Clone NameMSMg01-456P21
Chromosome2 (Build37)
Map Location 78,730,064 - 78,730,509
singlet/doubletsinglet
Overlap geneUbe2e3
Upstream geneBC003993, LOC667920, OTTMUSG00000016703, LOC383717, LOC100040476, LOC100040494, 4930401B11Rik
Downstream geneLOC100040526, Itga4, Cerkl, Neurod1, Ssfa2, Ppp1r1c, Pde1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-456P21.T7 (MSMg01no456_p21.b1)MSMg01-456P21.TJ (MSMg01no456_p21.g1)
ACCAG543164AG543165
length1,110781
length of high quality
(start - end)
---445 (80 - 524)
definitionCHROMAT_FILE: MSMg01no456_p21.b1 PHD_FILE: MSMg01no456_p21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:00 2005CHROMAT_FILE: MSMg01no456_p21.g1 PHD_FILE: MSMg01no456_p21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:29:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGTAGAGTATTCTGTTTGCTCGNATCGTTATAGAAGACTTATTCTCTCAC
ATTATGGTATGAGGATGTGTTGATTCGTTCTAGGTCCTCTTCACCTGTTG
CCGGATGCGTATAATGATCTATGCTTACATTTACTTCACATCCTCTCTTA
ATTTACTCTTGACTATTCTACCCACTCTATATACCTATGATCCACAGCTA
GCAACGACTCGGTCACTTGCACTAAGTGTGTGTATCGGTTGTTTACTTTG
TTTAGCCGCCGCTTCATTCCTTGTGTACCGCGAGAGATGCCGCACCTGAG
CACTTCTACACATAATCACGCTATGTTACGCTTGTCGGCGCCTTTCTACT
AACATATAAACAGAATGACCACCATATACGACTCCTTTGTGCTTAACCAC
ATACGACTGCACGTAGCTACGCTAATCCGATGCGACGACATTACTTGCAA
GAGATTGCACCTTGTTAGGATACCCTAATATTAATACCAGACGGCTCTCG
ATAGATGTTGCGATTGTGCGCGCGCACCGAATTGAGCCCTGTTCACTGTG
CGAATAGCATCGGCTTTTTGTCCATAACATTTATTCGAGCAGACAGACAC
TAACAACTTGATTATAAGCGTTGTATGCACCGCGCGCTTATTTGCTCACC
TTCCGTCGCGTCATCCTCTCCTATCTATTTTGTGTGACCACGAGGGTTGC
CACCTTCCTCATTTGAATAGCACACTATAATACCTCTGTTTTGCCACACG
ATATCTCTGCGCTCCATCTTCATACTCATGACAGCGACCTGCAATTAAGA
GATATGTACGAAGCATATACCGATATGGAGAACACATTATACCACATTAG
TCATCCCAACATATCAGATGCGCATCGATATATAGCCCACCTCGAGTGAT
TTCTACGCGCCCGCTCAACTACTATTTTGATCGCCCAANATATACTAACT
GCTGGTGTGAAGCGACACGTACACGCTCCGTTCTCGGCCATATATGATGA
ATCGCATCATCGAAGGTCACGCCGCGGCTGCTACTTTACACGTTGATATG
GATTGACAGCGCCAACAAACACATACCATTGTGACTATACACACGCGCTC
ATTCATCTTC
TTTTTTCCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCATTCCGTTTCCTGACTGT
TGATGCAATGTGACTAGGAGCCTCGAGATCCTGCTGTCATGGCTTCCCCA
TCATAATGGACTATATCCTCAAACTGTGAGCCAGAAATGAACCTAAACCT
TTCTTTCCTCCCCTAAGTTGCTTCTTCTCATGGTGTCACAACAACAAGAC
AAGTAACTAGTACCAATACTGTTTATATTTTCAGGTCTAGTCTAGTAAAC
AGGGCAAGTATTCAGGTTTACTGAATTCACGGTGCACACGCTTTTGCCAT
CACAGAAATAAACAAATCTTTAAAAGTTGTACAGAGAACTAAACATGGTA
TTTAATGAATGGGACCCTGGGGAATTTTTTTTTAAAAAATCGTGGTAACA
AGATGAAAATAAAAATAACACACACAAACATAGCAAGCAGTGATATTTGC
AGCAATATATATGCATGATAAGAGAAAGGAGTGTGGAACAGTAAGGAGCA
ACCTGAAAATACAATCTAGGCAACAAAAGTAGAAACAAATTATTTCCCAA
TTTATTTCAGGGAGAGATAACAAGTTTCAAGATAAGCGAAATGAATTAAC
AACTCTCTTATATATAGAACTATAAGTGTTTTTTCAAAAAAAAAAACAAT
TGGAAAAAAATTTTTCAAAGATCTACCTTAAAAGAAAAAACCCCTCCTTT
TTCTCCNCGAGGTCATATTTATTTTATTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no456_p21.g1 MSMg01no456_p21.g1 CHROMAT_FILE:
MSMg01no456_p21.g1 PHD_FILE: MSMg01no456_p21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:29:01 2005
         (445 letters)



>mm_chr2_78729680_78730525
          Length = 846

 Score =  816 bits (422), Expect = 0.0
 Identities = 440/448 (98%), Gaps = 5/448 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   atcattccgtttcctgactgttgatgcaatgtgactaggagcctcgagatcctgctgtca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 atcattccgtttcctgactgttgatgcaatgtgactaggagcctcgagatcctgctgtca 771

                                                                       
Query: 61  tggcttccccatcataatggactatatcctcaaactgtgagccagaaatgaacctaaacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 tggcttccccatcataatggactatatcctcaaactgtgagccagaaatgaacctaaacc 711

                                                                       
Query: 121 tttctttcctcccctaagttgcttcttctcatggtgtcacaacaacaagacaagtaacta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 tttctttcctcccctaagttgcttcttctcatggtgtcacaacaacaagacaagtaacta 651

                                                                       
Query: 181 gtaccaatactgtttatattttcaggtctagtctagtaaacagggcaagtattcaggttt 240
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 650 gtaccaatactgtttatattttcaggtctagtctagtaaacggggcaagtattcaggttt 591

                                                                       
Query: 241 actgaattcacggtgcacacgcttttgccatcacagaaataaacaaatctttaaaagttg 300
           ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 actgaagccacggtgcacacgcttttgccatcacagaaataaacaaatctttaaaagttg 531

                                                                       
Query: 301 tacagagaactaaacatggtatttaatgaatgggaccctggggaatttttttttaaaaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||
Sbjct: 530 tacagagaactaaacatggtatttaatgaatgggaccctggggaattttttt--aaaaaa 473

                                                                       
Query: 361 ---tcgtggtaacaagatgaaaataaaaataacacacacaaacatagcaagcagtgatat 417
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 aaatcgtggtaacaagatgaaaataaaaataacacacacaaacatagcaagcagtgatat 413

                                       
Query: 418 ttgcagcaatatatatgcatgataagag 445
           ||||||||||||||||||||||||||||
Sbjct: 412 ttgcagcaatatatatgcatgataagag 385


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 846
Length adjustment: 10
Effective length of query: 435
Effective length of database: 836
Effective search space:   363660
Effective search space used:   363660
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)